Variant report

Variant	rs989727
Chromosome Location	chr7:117003539-117003540
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117000902..117003884-chr7:117006867..117010575,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10249651	0.91[ASN][1000 genomes]
rs10255917	0.94[ASN][1000 genomes]
rs10264075	0.97[ASN][1000 genomes]
rs10278130	0.94[ASN][1000 genomes]
rs1029396	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1029397	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs10487372	1.00[JPT][hapmap]
rs10953841	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10953843	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953844	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953845	0.92[ASN][1000 genomes]
rs10953846	0.89[ASN][1000 genomes]
rs11769166	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12333572	0.90[ASN][1000 genomes]
rs12537601	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13245795	0.84[ASN][1000 genomes]
rs17139830	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs17139859	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs17139881	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs17139920	0.83[YRI][hapmap]
rs177068	0.81[ASN][1000 genomes]
rs2027946	0.82[EUR][1000 genomes]
rs2051714	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2051718	0.93[ASN][1000 genomes]
rs2078967	0.84[ASN][1000 genomes]
rs2188158	0.88[EUR][1000 genomes]
rs2188555	0.90[ASN][1000 genomes]
rs2228946	1.00[JPT][hapmap]
rs2237721	0.94[EUR][1000 genomes]
rs2237725	0.88[EUR][1000 genomes]
rs2239957	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2283054	0.94[EUR][1000 genomes]
rs254536	0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs2896224	0.84[ASN][1000 genomes]
rs34256873	0.81[ASN][1000 genomes]
rs34456592	0.88[EUR][1000 genomes]
rs3926643	0.94[ASN][1000 genomes]
rs39312	0.82[ASN][1000 genomes]
rs39315	0.83[ASN][1000 genomes]
rs39317	0.86[LWK][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs39324	0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs4148682	0.94[EUR][1000 genomes]
rs4148698	0.88[EUR][1000 genomes]
rs4148703	0.88[EUR][1000 genomes]
rs43025	0.81[ASN][1000 genomes]
rs43027	0.81[ASN][1000 genomes]
rs43028	0.81[ASN][1000 genomes]
rs43029	0.81[ASN][1000 genomes]
rs43030	0.80[ASN][1000 genomes]
rs43032	0.81[ASN][1000 genomes]
rs43033	0.81[ASN][1000 genomes]
rs43034	0.82[ASN][1000 genomes]
rs4458806	0.83[ASN][1000 genomes]
rs4571678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4727849	0.92[ASN][1000 genomes]
rs4727850	0.92[ASN][1000 genomes]
rs4730786	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6960356	0.97[ASN][1000 genomes]
rs6966836	0.95[ASN][1000 genomes]
rs6966838	0.89[ASN][1000 genomes]
rs6972168	0.85[ASN][1000 genomes]
rs6972819	1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs6979185	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72603594	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72603595	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7357267	0.95[ASN][1000 genomes]
rs739517	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7784156	0.89[ASN][1000 genomes]
rs7797163	0.89[EUR][1000 genomes]
rs7803222	0.82[EUR][1000 genomes]
rs7805063	0.93[ASN][1000 genomes]
rs7808424	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9792104	0.83[ASN][1000 genomes]
rs994996	0.91[ASN][1000 genomes]
rs994997	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117000200-117005800	Enhancers	Fetal Lung	lung
2	chr7:117003000-117004200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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