Variant report

Variant	rs10953846
Chromosome Location	chr7:117077110-117077111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117040460..117042560-chr7:117075825..117078243,2	MCF-7	breast:
2	chr7:117075650..117077165-chr7:117353827..117356088,2	MCF-7	breast:
3	chr7:117074197..117078420-chr7:117083146..117089116,5	MCF-7	breast:
4	chr7:117061385..117064325-chr7:117074791..117077607,2	MCF-7	breast:
5	chr7:117075494..117078178-chr7:117079303..117082074,2	K562	blood:
6	chr7:117067493..117070336-chr7:117075402..117077770,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214684	Chromatin interaction
ENSG00000154438	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10249651	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10255917	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10264075	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10278130	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1029396	0.90[ASN][1000 genomes]
rs10953843	0.93[ASN][1000 genomes]
rs10953844	0.96[ASN][1000 genomes]
rs10953845	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11769166	0.98[ASN][1000 genomes]
rs12333572	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537601	0.91[ASN][1000 genomes]
rs13222797	0.89[ASN][1000 genomes]
rs13245795	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs177068	0.91[ASN][1000 genomes]
rs177070	0.89[ASN][1000 genomes]
rs2051718	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2078967	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2188555	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2283054	0.87[ASN][1000 genomes]
rs254536	0.98[EUR][1000 genomes]
rs2896224	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34256873	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3926643	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39312	0.94[EUR][1000 genomes]
rs39315	0.97[EUR][1000 genomes]
rs39317	0.98[EUR][1000 genomes]
rs39324	0.99[EUR][1000 genomes]
rs4148682	0.85[ASN][1000 genomes]
rs43025	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs43026	0.86[ASN][1000 genomes]
rs43027	0.91[ASN][1000 genomes]
rs43028	0.91[ASN][1000 genomes]
rs43029	0.91[ASN][1000 genomes]
rs43030	0.90[ASN][1000 genomes]
rs43031	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs43032	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs43033	0.91[ASN][1000 genomes]
rs43034	0.92[ASN][1000 genomes]
rs43035	0.88[ASN][1000 genomes]
rs43036	0.88[ASN][1000 genomes]
rs4458806	0.93[ASN][1000 genomes]
rs4727849	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727850	0.96[ASN][1000 genomes]
rs4730786	0.91[ASN][1000 genomes]
rs6960356	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6966836	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6966838	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6972168	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6979185	0.93[ASN][1000 genomes]
rs713134	0.87[ASN][1000 genomes]
rs72603594	0.90[ASN][1000 genomes]
rs72603595	0.91[ASN][1000 genomes]
rs7357267	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7784156	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805063	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7808424	0.99[ASN][1000 genomes]
rs7810506	0.85[ASN][1000 genomes]
rs9792104	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs989727	0.89[ASN][1000 genomes]
rs994996	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs994997	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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