Variant report

Variant	rs10278130
Chromosome Location	chr7:117022604-117022605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116754962-116765597..7:117018624-117024206	Hela-S3	cervix:
2	7:116849860-116864942..7:117018624-117024206	GM12878	blood:
3	7:116434729-116454408..7:117018624-117024206	Hela-S3	cervix:
4	7:116604327-116608063..7:117018624-117024206	Hela-S3	cervix:
5	7:115847372-115857098..7:117018624-117024206	GM12878	blood:
6	chr7:117020936..117022628-chr7:117023583..117026209,2	MCF-7	breast:
7	7:115861595-115870968..7:117018624-117024206	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000228368	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10249651	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10255917	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264075	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1029396	0.95[ASN][1000 genomes]
rs10953841	0.82[ASN][1000 genomes]
rs10953843	0.91[ASN][1000 genomes]
rs10953844	0.92[ASN][1000 genomes]
rs10953845	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953846	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11769166	0.90[ASN][1000 genomes]
rs12333572	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537601	0.96[ASN][1000 genomes]
rs13222797	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13245795	0.87[ASN][1000 genomes]
rs177068	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177070	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051718	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2078967	0.87[ASN][1000 genomes]
rs213935	0.80[EUR][1000 genomes]
rs213937	0.80[EUR][1000 genomes]
rs213942	0.80[EUR][1000 genomes]
rs213943	0.80[EUR][1000 genomes]
rs2188555	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs254536	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2896224	0.87[ASN][1000 genomes]
rs34256873	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3926643	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs39312	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs39315	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs39317	0.84[EUR][1000 genomes]
rs39324	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs43025	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43026	0.81[ASN][1000 genomes]
rs43027	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43028	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43029	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43030	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs43031	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs43032	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43033	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43034	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43035	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43036	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4458806	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4727849	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4727850	0.94[ASN][1000 genomes]
rs4730786	0.84[ASN][1000 genomes]
rs6960356	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966836	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6966838	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6972168	0.88[ASN][1000 genomes]
rs6979185	0.91[ASN][1000 genomes]
rs713134	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72603594	0.95[ASN][1000 genomes]
rs72603595	0.96[ASN][1000 genomes]
rs7357267	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs756665	0.86[EUR][1000 genomes]
rs7784156	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7805063	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7808424	0.91[ASN][1000 genomes]
rs7810506	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs885993	0.86[EUR][1000 genomes]
rs9792104	0.86[ASN][1000 genomes]
rs980574	0.80[EUR][1000 genomes]
rs989727	0.94[ASN][1000 genomes]
rs994996	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs994997	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117020600-117028000	Enhancers	Hela-S3	cervix
2	chr7:117021800-117023200	Weak transcription	Fetal Lung	lung
3	chr7:117021800-117025400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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