Variant report

Variant	rs6972168
Chromosome Location	chr7:117084585-117084586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117080401..117082569-chr7:117084180..117087219,3	K562	blood:
2	chr7:117074197..117078420-chr7:117083146..117089116,5	MCF-7	breast:
3	chr7:117084093..117086526-chr7:117087348..117089207,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214684	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10249651	0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10255917	0.88[ASN][1000 genomes]
rs10264075	0.84[ASN][1000 genomes]
rs10278130	0.88[ASN][1000 genomes]
rs1029396	0.86[ASN][1000 genomes]
rs10953843	0.89[ASN][1000 genomes]
rs10953844	0.92[ASN][1000 genomes]
rs10953845	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953846	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769166	0.94[ASN][1000 genomes]
rs12333572	0.91[ASN][1000 genomes]
rs12537601	0.87[ASN][1000 genomes]
rs13222797	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13245795	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17139859	0.83[YRI][hapmap]
rs177068	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177070	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051718	0.84[ASN][1000 genomes]
rs2078967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2082056	0.80[CEU][hapmap]
rs213936	0.86[CEU][hapmap]
rs213942	0.82[CEU][hapmap]
rs213943	0.80[CEU][hapmap]
rs213950	0.82[CEU][hapmap]
rs213953	0.86[CEU][hapmap]
rs2188555	0.91[ASN][1000 genomes]
rs2237722	0.86[CEU][hapmap]
rs2283054	0.88[ASN][1000 genomes]
rs254536	0.86[EUR][1000 genomes]
rs2896224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34256873	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3926643	0.85[ASN][1000 genomes]
rs39312	0.82[EUR][1000 genomes]
rs39315	0.85[EUR][1000 genomes]
rs39317	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs39324	0.87[EUR][1000 genomes]
rs4148682	0.89[ASN][1000 genomes]
rs43025	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43026	0.90[ASN][1000 genomes]
rs43027	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43028	0.80[CEU][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43029	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43030	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs43031	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs43032	0.80[CEU][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43033	0.82[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43034	0.80[CEU][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs43035	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs43036	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4458806	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4727849	0.85[ASN][1000 genomes]
rs4727850	0.92[ASN][1000 genomes]
rs4730786	0.96[ASN][1000 genomes]
rs6960356	0.84[ASN][1000 genomes]
rs6966836	0.86[ASN][1000 genomes]
rs6966838	0.93[ASN][1000 genomes]
rs6979185	0.89[ASN][1000 genomes]
rs713134	0.83[CEU][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs718829	0.89[CEU][hapmap]
rs725188	0.82[CEU][hapmap]
rs72603594	0.86[ASN][1000 genomes]
rs72603595	0.87[ASN][1000 genomes]
rs7357267	0.85[ASN][1000 genomes]
rs756665	0.83[EUR][1000 genomes]
rs7784156	0.93[ASN][1000 genomes]
rs7797163	0.83[ASN][1000 genomes]
rs7805063	0.88[ASN][1000 genomes]
rs7808424	0.95[ASN][1000 genomes]
rs7810506	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs885993	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs9792104	0.93[CEU][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980574	0.80[CEU][hapmap]
rs989727	0.85[ASN][1000 genomes]
rs994996	0.89[ASN][1000 genomes]
rs994997	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117082200-117088400	Weak transcription	Pancreas	Pancrea
2	chr7:117084400-117086600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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