Variant report

Variant	rs718829
Chromosome Location	chr7:117207860-117207861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr7:117207829-117208207	A549	lung:	n/a	n/a
2	NR3C1	chr7:117207781-117208258	A549	lung:	n/a	n/a
3	NR3C1	chr7:117207845-117208202	A549	lung:	n/a	n/a
4	NR3C1	chr7:117207826-117208240	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117203452..117206266-chr7:117206487..117208495,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232661	TF binding region
ENSG00000232661	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs1042077	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10487368	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10487369	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10953847	0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs117243	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11770639	0.86[ASN][1000 genomes]
rs12333572	0.81[CEU][hapmap]
rs12533524	0.90[ASN][1000 genomes]
rs12538252	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12673260	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13222797	0.87[EUR][1000 genomes]
rs13438309	0.85[EUR][1000 genomes]
rs1429566	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1469486	0.98[ASN][1000 genomes]
rs1557630	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs177068	0.87[EUR][1000 genomes]
rs177070	0.86[EUR][1000 genomes]
rs1820871	0.84[ASN][1000 genomes]
rs1896886	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1896887	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1896888	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2027944	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2027945	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2027946	0.83[ASN][1000 genomes]
rs2051718	0.85[CEU][hapmap]
rs2078753	0.93[ASN][1000 genomes]
rs2082056	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213934	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213935	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213936	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs213937	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs213942	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213943	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213946	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213950	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs213953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs213956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs213957	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213958	0.97[ASN][1000 genomes]
rs213961	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs213963	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213964	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213965	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213966	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213967	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213968	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213970	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213971	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213973	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213974	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2157946	0.81[CEU][hapmap]
rs2188159	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2188555	0.85[CEU][hapmap]
rs2237721	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2237722	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2237723	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2237724	0.91[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2237725	0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2283054	0.81[CHB][hapmap]
rs2283055	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2283056	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2283057	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2402204	0.85[ASN][1000 genomes]
rs2402205	0.85[ASN][1000 genomes]
rs2402228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2518873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34256873	0.87[EUR][1000 genomes]
rs34456592	0.87[ASN][1000 genomes]
rs34683806	0.86[ASN][1000 genomes]
rs34855237	0.90[ASN][1000 genomes]
rs35388491	0.85[ASN][1000 genomes]
rs35608825	0.86[ASN][1000 genomes]
rs3757802	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs3808183	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs3808184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3808185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3808186	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3926643	0.82[CEU][hapmap]
rs4148686	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4148687	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4148688	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4148689	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4148690	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4148691	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4148692	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4148696	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4148697	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4148698	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4148699	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4148703	0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4148706	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4148709	0.96[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4148711	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4148713	0.93[ASN][1000 genomes]
rs43025	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs43027	0.88[EUR][1000 genomes]
rs43028	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs43029	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs43030	0.88[EUR][1000 genomes]
rs43031	0.88[EUR][1000 genomes]
rs43032	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs43033	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs43034	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs43035	0.88[EUR][1000 genomes]
rs43036	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4458806	0.87[EUR][1000 genomes]
rs4727851	0.85[CEU][hapmap]
rs6466611	0.81[CEU][hapmap]
rs6466613	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6466614	0.96[ASN][1000 genomes]
rs6949974	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6951141	0.85[ASN][1000 genomes]
rs6957317	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6960356	0.81[CEU][hapmap]
rs6969138	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6972168	0.89[CEU][hapmap]
rs6977764	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6979652	0.94[ASN][1000 genomes]
rs713134	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs725188	0.96[CEU][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs739378	0.90[ASN][1000 genomes]
rs756665	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7786196	0.85[ASN][1000 genomes]
rs7793127	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7803222	0.88[ASN][1000 genomes]
rs7805063	0.85[CEU][hapmap]
rs7810506	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs885993	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs957461	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9792104	0.80[CEU][hapmap]
rs980574	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117173000-117208000	Weak transcription	Pancreas	Pancrea
2	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117202400-117212600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117206400-117208400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:117206400-117211600	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117206400-117216800	Weak transcription	Small Intestine	intestine
7	chr7:117206600-117217600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:117207000-117211400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:117207000-117212200	Weak transcription	Stomach Mucosa	stomach

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