Variant report

Variant	rs13438309
Chromosome Location	chr7:117158642-117158643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10487368	0.88[ASN][1000 genomes]
rs10487369	0.92[ASN][1000 genomes]
rs10953847	0.89[ASN][1000 genomes]
rs11770639	0.93[ASN][1000 genomes]
rs12533524	0.89[ASN][1000 genomes]
rs12538252	0.93[ASN][1000 genomes]
rs12673260	0.90[ASN][1000 genomes]
rs13222797	0.82[EUR][1000 genomes]
rs1429566	0.93[ASN][1000 genomes]
rs1557630	0.90[ASN][1000 genomes]
rs177068	0.82[EUR][1000 genomes]
rs177070	0.81[EUR][1000 genomes]
rs1820871	0.83[ASN][1000 genomes]
rs1896886	0.88[ASN][1000 genomes]
rs1896887	0.88[ASN][1000 genomes]
rs1896888	0.89[ASN][1000 genomes]
rs2027944	0.88[ASN][1000 genomes]
rs2027945	0.89[ASN][1000 genomes]
rs2027946	0.81[ASN][1000 genomes]
rs2082056	0.84[EUR][1000 genomes]
rs213934	0.83[EUR][1000 genomes]
rs213935	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213936	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213937	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213942	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213943	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213946	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs213953	0.84[EUR][1000 genomes]
rs2188158	0.87[ASN][1000 genomes]
rs2188159	0.92[ASN][1000 genomes]
rs2237721	0.88[ASN][1000 genomes]
rs2237722	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2237723	0.90[ASN][1000 genomes]
rs2237724	0.92[ASN][1000 genomes]
rs2237725	0.88[ASN][1000 genomes]
rs2283055	0.89[ASN][1000 genomes]
rs2283056	0.90[ASN][1000 genomes]
rs2283057	0.88[ASN][1000 genomes]
rs2402204	0.92[ASN][1000 genomes]
rs2402205	0.92[ASN][1000 genomes]
rs2518873	0.83[EUR][1000 genomes]
rs34256873	0.82[EUR][1000 genomes]
rs34456592	0.85[ASN][1000 genomes]
rs34683806	0.93[ASN][1000 genomes]
rs34855237	0.89[ASN][1000 genomes]
rs35388491	0.92[ASN][1000 genomes]
rs35608825	0.93[ASN][1000 genomes]
rs3757802	0.87[ASN][1000 genomes]
rs3808186	0.93[ASN][1000 genomes]
rs4148686	0.89[ASN][1000 genomes]
rs4148687	0.90[ASN][1000 genomes]
rs4148688	0.89[ASN][1000 genomes]
rs4148689	0.92[ASN][1000 genomes]
rs4148690	0.90[ASN][1000 genomes]
rs4148692	0.91[ASN][1000 genomes]
rs4148696	0.93[ASN][1000 genomes]
rs4148697	0.93[ASN][1000 genomes]
rs4148698	0.91[ASN][1000 genomes]
rs4148699	0.92[ASN][1000 genomes]
rs4148703	0.88[ASN][1000 genomes]
rs4148706	0.89[ASN][1000 genomes]
rs43025	0.83[EUR][1000 genomes]
rs43027	0.83[EUR][1000 genomes]
rs43028	0.83[EUR][1000 genomes]
rs43029	0.85[EUR][1000 genomes]
rs43030	0.83[EUR][1000 genomes]
rs43031	0.83[EUR][1000 genomes]
rs43032	0.81[EUR][1000 genomes]
rs43033	0.83[EUR][1000 genomes]
rs43034	0.83[EUR][1000 genomes]
rs43035	0.83[EUR][1000 genomes]
rs43036	0.82[EUR][1000 genomes]
rs4458806	0.82[EUR][1000 genomes]
rs6466613	0.89[ASN][1000 genomes]
rs6951141	0.92[ASN][1000 genomes]
rs6957317	0.92[ASN][1000 genomes]
rs6969138	0.92[ASN][1000 genomes]
rs6977764	0.93[ASN][1000 genomes]
rs713134	0.83[EUR][1000 genomes]
rs718829	0.85[EUR][1000 genomes]
rs725188	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs739378	0.88[ASN][1000 genomes]
rs756665	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7786196	0.92[ASN][1000 genomes]
rs7793127	0.90[ASN][1000 genomes]
rs7803222	0.87[ASN][1000 genomes]
rs7810506	0.83[EUR][1000 genomes]
rs885993	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs957461	0.93[ASN][1000 genomes]
rs980574	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3328353	chr7:117157516-117159714	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117151800-117172600	Weak transcription	Pancreas	Pancrea
2	chr7:117154400-117169600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:117154400-117170800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117154400-117174400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117154600-117164200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117155400-117163400	Weak transcription	Fetal Intestine Small	intestine

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