Variant report

Variant	rs756665
Chromosome Location	chr7:117128942-117128943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117125349..117127629-chr7:117128449..117131310,2	MCF-7	breast:

Extended variants
information (count: 162 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10249651	0.81[CHB][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs10255917	0.85[EUR][1000 genomes]
rs10264075	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10278130	0.86[EUR][1000 genomes]
rs1029396	0.86[CHB][hapmap]
rs1042077	0.95[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs10487365	0.81[CHB][hapmap]
rs10487368	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10487369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10953841	0.81[CHB][hapmap]
rs10953843	0.81[CHB][hapmap]
rs10953847	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs117243	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs11769166	0.85[CHB][hapmap]
rs11770639	0.96[ASN][1000 genomes]
rs12333572	0.81[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12533524	0.92[ASN][1000 genomes]
rs12535986	0.86[CHB][hapmap]
rs12538252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12673260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13222797	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13245795	0.82[EUR][1000 genomes]
rs13438309	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1429566	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1469486	0.81[ASN][1000 genomes]
rs1557630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs177068	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs177070	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1820871	0.85[ASN][1000 genomes]
rs1896886	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1896887	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1896888	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2027944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2027945	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2027946	0.84[ASN][1000 genomes]
rs2051718	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs2078967	0.83[EUR][1000 genomes]
rs2082056	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs213934	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs213935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213936	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213937	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213942	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213950	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs213953	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs213955	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs213956	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs213957	0.83[EUR][1000 genomes]
rs213961	0.81[EUR][1000 genomes]
rs213963	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs213964	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs213965	0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs213966	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs213967	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs213968	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs213970	0.82[EUR][1000 genomes]
rs213971	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs213973	0.82[EUR][1000 genomes]
rs213974	0.82[EUR][1000 genomes]
rs213977	0.80[GIH][hapmap]
rs2157946	0.89[ASW][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap]
rs2188158	0.93[ASN][1000 genomes]
rs2188159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2188555	0.81[CHB][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2237721	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2237722	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237723	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2237724	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs2237725	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2283054	0.91[CHB][hapmap]
rs2283055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2283056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2283057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2402204	0.98[ASN][1000 genomes]
rs2402205	0.98[ASN][1000 genomes]
rs2402228	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2518873	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs254536	0.81[CHB][hapmap]
rs2896224	0.83[EUR][1000 genomes]
rs34256873	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34456592	0.88[ASN][1000 genomes]
rs34683806	0.96[ASN][1000 genomes]
rs34855237	0.92[ASN][1000 genomes]
rs35388491	0.98[ASN][1000 genomes]
rs35608825	0.96[ASN][1000 genomes]
rs3757802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3808183	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs3808184	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3808185	0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3808186	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3926643	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs39312	0.81[CHB][hapmap]
rs39315	0.81[CHB][hapmap]
rs39317	0.81[CHB][hapmap];0.80[TSI][hapmap]
rs39324	0.81[CHB][hapmap]
rs4148682	0.86[CHB][hapmap]
rs4148686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4148687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4148688	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4148689	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4148690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4148691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4148692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4148696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4148697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4148698	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs4148699	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4148703	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4148706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4148709	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4148711	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs43025	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43026	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs43027	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43028	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43029	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs43030	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43031	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43032	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[EUR][1000 genomes]
rs43033	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43034	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43035	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs43036	0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4458806	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4727849	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.85[EUR][1000 genomes]
rs4727851	0.89[ASW][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap]
rs4730778	0.86[CHB][hapmap]
rs4730786	0.81[CHB][hapmap]
rs6466611	0.86[CHB][hapmap]
rs6466613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6949974	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6951141	0.98[ASN][1000 genomes]
rs6957317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6960356	0.86[CHB][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6966836	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6966838	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6969138	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6972168	0.83[EUR][1000 genomes]
rs6977764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6979185	0.81[CHB][hapmap]
rs713134	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs718829	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs725188	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7357267	0.86[EUR][1000 genomes]
rs739378	0.91[ASN][1000 genomes]
rs739517	0.81[CHB][hapmap]
rs7784156	0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7786196	0.95[ASN][1000 genomes]
rs7793127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7803222	0.90[ASN][1000 genomes]
rs7805063	0.89[ASW][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7808424	0.86[CHB][hapmap]
rs7810506	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs885993	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957461	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9792104	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs980574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs994996	0.89[ASW][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs994997	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs756665	PPP1R3A	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117124000-117132200	Enhancers	Fetal Intestine Small	intestine
2	chr7:117125600-117129000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
4	chr7:117127400-117132400	Weak transcription	Dnd41	blood
5	chr7:117128400-117131000	Enhancers	Fetal Intestine Large	intestine
6	chr7:117128800-117129600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr7:117128800-117131200	Enhancers	Rectal Mucosa Donor 31	rectum

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