Variant report

Variant	rs994996
Chromosome Location	chr7:117052915-117052916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117046890..117048959-chr7:117051865..117054037,2	K562	blood:
2	7:117050387-117057168..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo
3	chr7:117051958..117054415-chr7:117066094..117067747,2	K562	blood:

Variant related genes	Relation type
ENSG00000154438	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10249651	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10255917	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10264075	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10278130	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1029396	0.90[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs10487365	0.95[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs10487368	0.81[CHB][hapmap]
rs10487369	0.81[CHB][hapmap]
rs10953841	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs10953843	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10953844	0.96[ASN][1000 genomes]
rs10953845	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953846	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953847	0.80[CHB][hapmap]
rs11769166	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs12333572	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12535986	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs12537601	0.90[ASN][1000 genomes]
rs12673260	0.81[CHB][hapmap]
rs13222797	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13245795	0.88[ASN][1000 genomes]
rs1429566	0.81[CHB][hapmap]
rs177068	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs177070	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1896886	0.81[CHB][hapmap]
rs1896887	0.81[CHB][hapmap]
rs1896888	0.81[CHB][hapmap]
rs2027944	0.80[CHB][hapmap]
rs2027945	0.80[CHB][hapmap]
rs2051718	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2078967	0.88[ASN][1000 genomes]
rs213934	0.84[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs213935	0.88[ASW][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs213936	0.81[CHB][hapmap];0.84[AMR][1000 genomes]
rs213937	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs213942	0.88[ASW][hapmap];0.81[CHB][hapmap];0.86[GIH][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs213943	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs213946	0.81[CHB][hapmap]
rs213950	0.88[ASW][hapmap];0.81[CHB][hapmap];0.86[GIH][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap]
rs213965	0.82[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs213971	0.84[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap]
rs2157946	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs2188159	0.81[CHB][hapmap]
rs2188555	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237721	0.81[CHB][hapmap]
rs2237722	0.81[CHB][hapmap];0.86[AMR][1000 genomes]
rs2237723	0.81[CHB][hapmap]
rs2237724	0.80[CHB][hapmap]
rs2237725	0.81[CHB][hapmap]
rs2283054	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2283056	0.81[CHB][hapmap]
rs2283057	0.81[CHB][hapmap]
rs254536	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs2896224	0.88[ASN][1000 genomes]
rs34256873	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757802	0.81[CHB][hapmap]
rs3808186	0.81[CHB][hapmap]
rs3926643	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39312	0.81[CHB][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs39315	0.81[CHB][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs39317	0.81[CHB][hapmap];0.82[CHD][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs39324	0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs4148682	0.86[CHB][hapmap]
rs4148686	0.81[CHB][hapmap]
rs4148687	0.81[CHB][hapmap]
rs4148688	0.81[CHB][hapmap]
rs4148689	0.81[CHB][hapmap]
rs4148690	0.81[CHB][hapmap]
rs4148691	0.81[CHB][hapmap]
rs4148692	0.81[CHB][hapmap]
rs4148696	0.81[CHB][hapmap]
rs4148697	0.81[CHB][hapmap]
rs4148698	0.81[CHB][hapmap]
rs4148699	0.81[CHB][hapmap]
rs4148703	0.81[CHB][hapmap]
rs43025	0.90[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43026	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs43027	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43028	0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43029	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43030	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43031	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs43032	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43033	1.00[ASW][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs43034	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs43035	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs43036	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4458806	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727849	0.84[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727850	0.96[ASN][1000 genomes]
rs4727851	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs4730778	0.90[CHB][hapmap]
rs4730786	0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs6466611	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6466613	0.81[CHB][hapmap]
rs6957317	0.81[CHB][hapmap]
rs6960356	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6966836	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6966838	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969138	0.81[CHB][hapmap]
rs6972168	0.89[ASN][1000 genomes]
rs6977764	0.81[CHB][hapmap]
rs6979185	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs713134	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs725188	0.84[AMR][1000 genomes]
rs72603594	0.89[ASN][1000 genomes]
rs72603595	0.90[ASN][1000 genomes]
rs7357267	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs739517	0.81[CHB][hapmap]
rs756665	0.89[ASW][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7784156	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7793127	0.81[CHB][hapmap]
rs7805063	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808424	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs7810506	0.86[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs885993	1.00[ASW][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9792104	0.90[CHB][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap];0.88[TSI][hapmap];0.87[ASN][1000 genomes]
rs980574	0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs989727	0.91[ASN][1000 genomes]
rs994997	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117051000-117054200	Enhancers	Hela-S3	cervix
2	chr7:117052800-117053600	Enhancers	Fetal Lung	lung

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