Variant report

Variant	rs6979185
Chromosome Location	chr7:117059378-117059379
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:117057168-117062301	H1-hESC	embryonic stem cell:	embryo
2	chr7:117058253..117061199-chr7:117072974..117075927,2	K562	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10249651	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10255917	0.91[ASN][1000 genomes]
rs10264075	0.91[ASN][1000 genomes]
rs10278130	0.91[ASN][1000 genomes]
rs1029396	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10487368	0.81[CHB][hapmap]
rs10487369	0.82[CHB][hapmap]
rs10953841	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953844	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953845	0.96[ASN][1000 genomes]
rs10953846	0.93[ASN][1000 genomes]
rs10953847	0.80[CHB][hapmap]
rs11769166	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12333572	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs12535986	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12537601	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12538252	0.81[CHB][hapmap]
rs12673260	0.82[CHB][hapmap]
rs13222797	0.83[ASN][1000 genomes]
rs13245795	0.87[ASN][1000 genomes]
rs1429566	0.80[CHB][hapmap]
rs1469486	0.81[CEU][hapmap]
rs1557630	0.81[CHB][hapmap]
rs177068	0.84[ASN][1000 genomes]
rs177070	0.83[ASN][1000 genomes]
rs1896886	0.81[CHB][hapmap]
rs1896887	0.81[CHB][hapmap]
rs1896888	0.81[CHB][hapmap]
rs2027944	0.81[CHB][hapmap]
rs2027945	0.80[CHB][hapmap]
rs2027946	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2051714	0.85[EUR][1000 genomes]
rs2051718	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs2078967	0.87[ASN][1000 genomes]
rs213935	0.81[CHB][hapmap]
rs213936	0.82[CHB][hapmap]
rs213942	0.81[CHB][hapmap]
rs213943	0.81[CHB][hapmap]
rs213946	0.82[CHB][hapmap]
rs213950	0.81[CHB][hapmap]
rs2157946	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs2188158	0.94[EUR][1000 genomes]
rs2188159	0.82[CHB][hapmap]
rs2188555	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237722	0.82[CHB][hapmap]
rs2237723	0.81[CHB][hapmap]
rs2237724	0.80[CHB][hapmap]
rs2237725	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2237726	1.00[CEU][hapmap]
rs2239957	0.82[EUR][1000 genomes]
rs2283054	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283055	0.80[CHB][hapmap]
rs2283056	0.82[CHB][hapmap]
rs2283057	0.82[CHB][hapmap]
rs2299445	1.00[CEU][hapmap]
rs254536	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2896224	0.87[ASN][1000 genomes]
rs34256873	0.84[ASN][1000 genomes]
rs34456592	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3757802	0.82[CHB][hapmap]
rs3808183	1.00[CEU][hapmap]
rs3808186	0.81[CHB][hapmap]
rs3926643	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs39312	0.81[CHB][hapmap]
rs39315	0.81[CHB][hapmap]
rs39317	0.81[CHB][hapmap]
rs39324	0.82[CHB][hapmap]
rs4148682	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4148686	0.82[CHB][hapmap]
rs4148687	0.82[CHB][hapmap]
rs4148688	0.81[CHB][hapmap]
rs4148689	0.81[CHB][hapmap]
rs4148690	0.82[CHB][hapmap]
rs4148691	0.82[CHB][hapmap]
rs4148692	0.82[CHB][hapmap]
rs4148696	0.82[CHB][hapmap]
rs4148697	0.82[CHB][hapmap]
rs4148698	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4148699	0.81[CHB][hapmap]
rs4148703	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4148706	0.81[CHB][hapmap]
rs4148709	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4148713	0.85[AFR][1000 genomes]
rs43025	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs43026	0.80[ASN][1000 genomes]
rs43027	0.84[ASN][1000 genomes]
rs43028	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs43029	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs43030	0.83[ASN][1000 genomes]
rs43031	0.83[ASN][1000 genomes]
rs43032	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs43033	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs43034	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs43035	0.81[ASN][1000 genomes]
rs43036	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs4458806	0.86[ASN][1000 genomes]
rs4727849	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4727850	0.83[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4727851	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4730778	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs4730786	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466611	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6466613	0.82[CHB][hapmap]
rs6466614	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6957317	0.81[CHB][hapmap]
rs6960356	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs6966836	0.90[ASN][1000 genomes]
rs6966838	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6969138	0.81[CHB][hapmap]
rs6972168	0.89[ASN][1000 genomes]
rs6977764	0.82[CHB][hapmap]
rs713134	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs72603594	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72603595	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7357267	0.87[ASN][1000 genomes]
rs739517	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs756665	0.81[CHB][hapmap]
rs7784156	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7793127	0.82[CHB][hapmap]
rs7797163	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7797932	1.00[CEU][hapmap]
rs7803222	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7805063	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7808424	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810506	0.86[CHB][hapmap]
rs885993	0.81[CHB][hapmap]
rs9792104	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs980574	0.82[CHB][hapmap]
rs989727	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994996	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs994997	0.96[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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