Variant report

Variant	rs2237726
Chromosome Location	chr7:117256374-117256375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117255020..117257143-chr7:117304303..117306209,2	MCF-7	breast:
2	chr7:117255614..117259660-chr7:117261825..117265320,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTTNBP2-1	chr7:117256283-117256394	ENSG00000083622.8

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10487365	1.00[CEU][hapmap]
rs10953843	1.00[CEU][hapmap]
rs11769166	1.00[CEU][hapmap]
rs1208525	0.90[CHB][hapmap]
rs1208528	0.90[CHB][hapmap]
rs12534186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12535986	1.00[CEU][hapmap]
rs12672572	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13237279	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469486	0.81[CEU][hapmap]
rs177284	0.84[ASN][1000 genomes]
rs2106155	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs213976	0.87[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs213983	0.90[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs213987	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs214152	0.89[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs214160	0.84[ASN][1000 genomes]
rs214161	0.83[ASN][1000 genomes]
rs214167	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap]
rs2237725	1.00[CEU][hapmap]
rs2246450	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283054	1.00[CEU][hapmap]
rs2283058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2299445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402229	0.90[CHB][hapmap]
rs34257228	0.84[EUR][1000 genomes]
rs35278595	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808183	1.00[CEU][hapmap]
rs4148682	1.00[CEU][hapmap]
rs4148698	1.00[CEU][hapmap]
rs4148703	1.00[CEU][hapmap]
rs4148709	1.00[CEU][hapmap]
rs4148714	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4148724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4373465	0.84[EUR][1000 genomes]
rs4730786	1.00[CEU][hapmap]
rs6975912	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap]
rs6979185	1.00[CEU][hapmap]
rs7784537	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7793030	0.89[CHB][hapmap]
rs7797932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7808424	1.00[CEU][hapmap]
rs975722	0.89[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117245800-117256600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117253000-117267200	Weak transcription	Dnd41	blood
4	chr7:117253200-117256400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:117253200-117256600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117253600-117256400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117255200-117256400	Weak transcription	Fetal Intestine Large	intestine
8	chr7:117255400-117256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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