Variant report

Variant	rs214167
Chromosome Location	chr7:117286524-117286525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117281674..117284051-chr7:117285578..117287275,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1042077	0.84[GIH][hapmap]
rs1208524	0.82[ASN][1000 genomes]
rs1208525	0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs1208526	0.83[ASN][1000 genomes]
rs1208528	0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12534186	1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs12672572	0.82[ASN][1000 genomes]
rs13237279	0.86[ASN][1000 genomes]
rs177284	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2106155	0.87[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213976	0.87[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs213983	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213987	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs214152	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs214160	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs214161	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237726	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs2246450	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2254742	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs2283058	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299445	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2402229	0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs35278595	0.93[ASN][1000 genomes]
rs3735645	0.91[MEX][hapmap]
rs4148714	0.87[ASN][1000 genomes]
rs4148724	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs6975912	0.86[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap]
rs7793030	0.88[CHB][hapmap]
rs7797932	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs975722	0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs214167	ING3	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117272600-117286600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:117274600-117287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:117282600-117286600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117283400-117286800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:117284800-117286600	Enhancers	HUVEC	blood vessel
8	chr7:117284800-117286800	Enhancers	A549	lung
9	chr7:117285000-117286600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:117285000-117286800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:117285400-117286800	Enhancers	Hela-S3	cervix
12	chr7:117285400-117286800	Enhancers	HMEC	breast
13	chr7:117285400-117286800	Enhancers	NHEK	skin
14	chr7:117285600-117286800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:117286000-117286800	Enhancers	Fetal Kidney	kidney
16	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:117286200-117286800	Enhancers	Fetal Intestine Large	intestine

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