Variant report

Variant	rs1208524
Chromosome Location	chr7:117334852-117334853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117332210-117336769	GM12878	blood:
2	chr7:117333712..117335629-chr7:117335751..117338385,2	K562	blood:
3	7:117100350-117112126..7:117332210-117336769	H1-hESC	embryonic stem cell:	embryo
4	chr7:117311174..117313006-chr7:117333110..117335168,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10266794	0.88[ASN][1000 genomes]
rs1208525	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208526	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1208528	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12534186	0.80[ASN][1000 genomes]
rs12672572	0.89[ASN][1000 genomes]
rs13237279	0.85[ASN][1000 genomes]
rs177284	0.89[ASN][1000 genomes]
rs1896885	0.93[ASN][1000 genomes]
rs213985	0.80[ASN][1000 genomes]
rs213987	0.80[ASN][1000 genomes]
rs214152	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs214160	0.91[ASN][1000 genomes]
rs214161	0.90[ASN][1000 genomes]
rs214167	0.82[ASN][1000 genomes]
rs2283058	0.82[ASN][1000 genomes]
rs2402229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34257228	0.93[ASN][1000 genomes]
rs34445757	0.88[ASN][1000 genomes]
rs35278595	0.80[ASN][1000 genomes]
rs3735645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4148724	0.85[ASN][1000 genomes]
rs4373465	0.93[ASN][1000 genomes]
rs6466619	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6970681	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6975912	0.85[ASN][1000 genomes]
rs6978581	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7777807	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7793030	0.87[ASN][1000 genomes]
rs975722	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117335000	Weak transcription	Dnd41	blood
2	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117330800-117337800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:117331200-117335000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:117331200-117335000	Weak transcription	Fetal Intestine Small	intestine

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