Variant report

Variant	rs214152
Chromosome Location	chr7:117325184-117325185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
2	chr7:117314542..117317864-chr7:117323534..117325952,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10266794	0.85[ASN][1000 genomes]
rs1208524	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208525	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208526	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1208528	0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534186	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12672572	0.94[ASN][1000 genomes]
rs13237279	0.90[ASN][1000 genomes]
rs177284	0.94[ASN][1000 genomes]
rs1896885	0.89[ASN][1000 genomes]
rs2106155	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs213977	0.89[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs213983	0.83[ASN][1000 genomes]
rs213985	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs213987	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs214160	0.96[ASN][1000 genomes]
rs214161	0.95[ASN][1000 genomes]
rs214167	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2237726	0.89[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2246450	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2254742	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2283058	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2299445	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2402229	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34257228	0.90[ASN][1000 genomes]
rs34445757	0.85[ASN][1000 genomes]
rs35278595	0.85[ASN][1000 genomes]
rs3735645	0.96[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4148724	0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs4373465	0.90[ASN][1000 genomes]
rs6466619	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6970681	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6975912	0.90[ASN][1000 genomes]
rs6978581	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777807	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793030	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs7797932	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs975722	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117315000-117326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117317200-117326000	Weak transcription	Dnd41	blood
3	chr7:117322000-117330600	Enhancers	Fetal Intestine Large	intestine
4	chr7:117323600-117326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:117323800-117326000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:117324000-117326000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:117324000-117326000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:117324000-117328400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:117324000-117328400	Weak transcription	Small Intestine	intestine
10	chr7:117324200-117326200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:117324200-117326400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:117324200-117326600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:117324400-117326600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:117324800-117325800	Weak transcription	Fetal Intestine Small	intestine
15	chr7:117324800-117326400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:117325000-117326000	Weak transcription	Hela-S3	cervix

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