Variant report

Variant	rs2283058
Chromosome Location	chr7:117302910-117302911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10266794	0.83[ASN][1000 genomes]
rs1208524	0.82[ASN][1000 genomes]
rs1208525	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs1208526	0.83[ASN][1000 genomes]
rs1208528	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs12534186	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13237279	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469486	0.81[CEU][hapmap]
rs177284	0.91[ASN][1000 genomes]
rs1896885	0.87[ASN][1000 genomes]
rs2106155	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs213983	0.85[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs213987	1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs214152	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs214160	0.91[ASN][1000 genomes]
rs214161	0.90[ASN][1000 genomes]
rs214167	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap]
rs2237725	1.00[CEU][hapmap]
rs2237726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2246450	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2254742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283054	1.00[CEU][hapmap]
rs2299445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2402229	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs34257228	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34445757	0.83[ASN][1000 genomes]
rs35278595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808183	1.00[CEU][hapmap]
rs4148682	1.00[CEU][hapmap]
rs4148698	1.00[CEU][hapmap]
rs4148703	1.00[CEU][hapmap]
rs4148709	1.00[CEU][hapmap]
rs4148714	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4148724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4373465	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4730786	1.00[CEU][hapmap]
rs6975912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap]
rs7784537	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7793030	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs7797932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs975722	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
3	chr7:117295400-117304400	Weak transcription	Hela-S3	cervix
4	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117300000-117304400	Weak transcription	A549	lung
6	chr7:117300400-117305800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:117300600-117304600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:117301000-117304400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:117301000-117304600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:117301600-117304400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:117301600-117304600	Weak transcription	Fetal Heart	heart
12	chr7:117301800-117304200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:117301800-117304400	Weak transcription	Dnd41	blood
14	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:117302000-117306000	Weak transcription	Fetal Intestine Large	intestine
16	chr7:117302000-117306600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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