Variant report

Variant	rs2254742
Chromosome Location	chr7:117264126-117264127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117260850..117264007-chr7:117264071..117265612,3	K562	blood:
2	chr7:117256748..117259660-chr7:117262256..117265219,3	K562	blood:
3	chr7:117255614..117259660-chr7:117261825..117265320,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11769166	1.00[CEU][hapmap]
rs1208525	0.90[CHB][hapmap]
rs1208528	0.90[CHB][hapmap]
rs12534186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535986	1.00[CEU][hapmap]
rs12672572	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13237279	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1469486	0.81[CEU][hapmap]
rs177284	0.85[ASN][1000 genomes]
rs1896885	0.81[ASN][1000 genomes]
rs2106155	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs213976	0.85[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs213983	0.92[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs213987	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs214152	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs214160	0.85[ASN][1000 genomes]
rs214161	0.85[ASN][1000 genomes]
rs214167	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap]
rs2237725	1.00[CEU][hapmap]
rs2237726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246450	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2283054	1.00[CEU][hapmap]
rs2283058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402229	0.90[CHB][hapmap]
rs34257228	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35278595	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808183	1.00[CEU][hapmap]
rs4148682	1.00[CEU][hapmap]
rs4148698	1.00[CEU][hapmap]
rs4148703	1.00[CEU][hapmap]
rs4148709	1.00[CEU][hapmap]
rs4148714	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4148724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4373465	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4730786	1.00[CEU][hapmap]
rs6975912	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap]
rs7784537	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7793030	0.89[CHB][hapmap]
rs7797932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808424	1.00[CEU][hapmap]
rs975722	0.89[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117253000-117267200	Weak transcription	Dnd41	blood
3	chr7:117257600-117270000	Weak transcription	Stomach Mucosa	stomach
4	chr7:117258000-117268600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117261200-117270600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117263200-117264400	Enhancers	Brain Angular Gyrus	brain
8	chr7:117263200-117264400	Enhancers	Brain Anterior Caudate	brain
9	chr7:117263200-117264400	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:117263200-117264400	Enhancers	Brain Hippocampus Middle	brain
11	chr7:117263200-117264600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:117263200-117264600	Enhancers	Brain Substantia Nigra	brain
13	chr7:117263600-117265600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:117263800-117264600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr7:117264000-117265400	Strong transcription	Fetal Intestine Large	intestine

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