Variant report

Variant	rs12534186
Chromosome Location	chr7:117292336-117292337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1208524	0.80[ASN][1000 genomes]
rs1208525	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs1208526	0.81[ASN][1000 genomes]
rs1208528	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs12672572	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13237279	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1469486	0.81[CEU][hapmap]
rs177284	0.89[ASN][1000 genomes]
rs1896885	0.84[ASN][1000 genomes]
rs2106155	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs213976	0.82[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs213983	0.89[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs213987	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs214152	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs214160	0.89[ASN][1000 genomes]
rs214161	0.88[ASN][1000 genomes]
rs214167	1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap]
rs2237725	1.00[CEU][hapmap]
rs2237726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246450	0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2254742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283054	1.00[CEU][hapmap]
rs2283058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2402229	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs34257228	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35278595	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808183	1.00[CEU][hapmap]
rs4148682	1.00[CEU][hapmap]
rs4148698	1.00[CEU][hapmap]
rs4148703	1.00[CEU][hapmap]
rs4148709	1.00[CEU][hapmap]
rs4148714	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4148724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4373465	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730786	1.00[CEU][hapmap]
rs6975912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap]
rs7784537	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7793030	0.89[CHB][hapmap]
rs7797932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs975722	0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117286800-117293000	Weak transcription	Fetal Intestine Large	intestine
4	chr7:117286800-117294600	Weak transcription	Hela-S3	cervix
5	chr7:117287600-117293000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117288000-117293200	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117288800-117297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:117289000-117293000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:117291600-117294600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:117291800-117293000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:117292200-117294000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:117292200-117294000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:117292200-117294200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:117292200-117294200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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