Variant report

Variant	rs177284
Chromosome Location	chr7:117311978-117311979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117304804..117307634-chr7:117310196..117313135,3	MCF-7	breast:
2	chr7:117311174..117313006-chr7:117333110..117335168,2	MCF-7	breast:
3	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10266794	0.81[ASN][1000 genomes]
rs1208524	0.89[ASN][1000 genomes]
rs1208525	0.90[CHB][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs1208526	0.90[ASN][1000 genomes]
rs1208528	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs12534186	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12672572	0.90[ASN][1000 genomes]
rs13237279	0.94[ASN][1000 genomes]
rs1896885	0.85[ASN][1000 genomes]
rs2106155	0.96[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs213977	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs213983	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs214152	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs214160	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs214161	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs214167	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2237726	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2246450	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2254742	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2283058	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2299445	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2402229	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs34257228	0.86[ASN][1000 genomes]
rs34445757	0.81[ASN][1000 genomes]
rs35278595	0.89[ASN][1000 genomes]
rs4148724	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4373465	0.86[ASN][1000 genomes]
rs6970681	0.86[ASN][1000 genomes]
rs6975912	0.94[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs7777807	0.85[ASN][1000 genomes]
rs7793030	0.89[CHB][hapmap]
rs7797932	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs975722	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
2	chr7:117306600-117313400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:117307400-117312800	Weak transcription	Fetal Intestine Small	intestine
4	chr7:117307600-117312200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117307600-117313400	Weak transcription	NHLF	lung
6	chr7:117307800-117312600	Weak transcription	Hela-S3	cervix
7	chr7:117308000-117313400	Weak transcription	Dnd41	blood
8	chr7:117308200-117312400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:117308200-117313000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:117308200-117313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:117308200-117313400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:117310200-117313200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:117310600-117312600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:117310600-117312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:117310600-117313200	Weak transcription	Esophagus	oesophagus
16	chr7:117310600-117313400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr7:117310600-117313400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:117310600-117313400	Weak transcription	Pancreas	Pancrea
19	chr7:117310600-117314600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:117310800-117313600	Weak transcription	Adipose Nuclei	Adipose
21	chr7:117311200-117313200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:117311200-117313200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:117311200-117313200	Weak transcription	Brain Substantia Nigra	brain
24	chr7:117311400-117313000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:117311400-117313200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:117311600-117313200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:117311800-117312800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr7:117311800-117313200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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