Variant report

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117065049-117068137..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
2	7:116651084-116657331..7:117341506-117356953	Hela-S3	cervix:
3	7:117251668-117255413..7:117341506-117356953	Hela-S3	cervix:
4	chr7:117338716..117341307-chr7:117344379..117346864,2	MCF-7	breast:
5	7:116754962-116765597..7:117341506-117356953	Hela-S3	cervix:
6	chr7:117342771..117345481-chr7:117345795..117348003,2	K562	blood:
7	7:116728195-116740907..7:117341506-117356953	Hela-S3	cervix:
8	7:116434729-116454408..7:117341506-117356953	Hela-S3	cervix:
9	7:117114628-117119361..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
10	7:117100350-117112126..7:117341506-117356953	GM12878	blood:
11	7:115847372-115857098..7:117341506-117356953	Hela-S3	cervix:
12	chr7:117340357..117343008-chr7:117343379..117345686,2	K562	blood:
13	7:115890993-115892266..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
14	7:116307511-116321259..7:117341506-117356953	Hela-S3	cervix:
15	7:116604327-116608063..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
16	7:115861595-115870968..7:117341506-117356953	Hela-S3	cervix:

No data

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10266794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208524	0.87[ASN][1000 genomes]
rs1208525	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1208526	0.88[ASN][1000 genomes]
rs1208528	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12534186	0.89[CHB][hapmap]
rs12672572	0.89[ASN][1000 genomes]
rs13237279	0.85[ASN][1000 genomes]
rs1896885	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2106155	0.89[CHB][hapmap]
rs213977	0.89[CHB][hapmap]
rs213985	0.89[CHB][hapmap]
rs213987	0.89[CHB][hapmap]
rs214152	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs214167	0.88[CHB][hapmap]
rs2237726	0.89[CHB][hapmap]
rs2246450	0.83[CHB][hapmap]
rs2254742	0.89[CHB][hapmap]
rs2283058	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs2299445	0.89[CHB][hapmap]
rs2402229	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs34257228	0.93[ASN][1000 genomes]
rs34445757	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3735645	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs4148724	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs4373465	0.93[ASN][1000 genomes]
rs6466619	0.87[JPT][hapmap]
rs6970681	0.92[ASN][1000 genomes]
rs6975912	0.85[ASN][1000 genomes]
rs6978581	0.88[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7777807	0.91[ASN][1000 genomes]
rs7784537	0.87[JPT][hapmap]
rs7797932	0.89[CHB][hapmap]
rs975722	0.88[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117343200-117345000	Enhancers	Hela-S3	cervix
3	chr7:117344400-117350000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:117344400-117364400	Weak transcription	H9 Cell Line	embryonic stem cell

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