Variant report

Variant	rs1208526
Chromosome Location	chr7:117337484-117337485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117333712..117335629-chr7:117335751..117338385,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10266794	0.89[ASN][1000 genomes]
rs117243	1.00[YRI][hapmap]
rs1208524	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1208525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1208528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534186	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs12672572	0.90[ASN][1000 genomes]
rs13237279	0.86[ASN][1000 genomes]
rs177284	0.90[ASN][1000 genomes]
rs1896885	0.93[ASN][1000 genomes]
rs2106155	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs213934	0.83[ASW][hapmap];0.87[YRI][hapmap]
rs213953	1.00[YRI][hapmap]
rs213963	1.00[YRI][hapmap]
rs213964	1.00[YRI][hapmap]
rs213965	0.92[ASW][hapmap];1.00[YRI][hapmap]
rs213966	1.00[YRI][hapmap]
rs213967	1.00[YRI][hapmap]
rs213968	1.00[YRI][hapmap]
rs213971	0.91[ASW][hapmap];1.00[YRI][hapmap]
rs213977	1.00[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.90[LWK][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs213985	0.94[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs213987	0.94[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs214152	0.92[CEU][hapmap];0.94[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs214160	0.92[ASN][1000 genomes]
rs214161	0.91[ASN][1000 genomes]
rs214167	0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs2237726	0.94[CHB][hapmap]
rs2246450	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2254742	0.94[CHB][hapmap]
rs2283058	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs2299445	0.94[CHB][hapmap]
rs2402229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34257228	0.94[ASN][1000 genomes]
rs34445757	0.89[ASN][1000 genomes]
rs35278595	0.81[ASN][1000 genomes]
rs3735645	0.92[ASW][hapmap];0.96[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4148724	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs4373465	0.94[ASN][1000 genomes]
rs6466619	1.00[CEU][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6970681	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6975912	0.86[ASN][1000 genomes]
rs6978581	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7777807	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7784537	0.94[JPT][hapmap]
rs7793030	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7797932	0.94[CHB][hapmap]
rs975722	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1208526	PPP1R3A	cis	parietal	SCAN
rs1208526	ING3	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117330800-117337800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117335000-117338200	Enhancers	Fetal Intestine Small	intestine
4	chr7:117335000-117339000	Enhancers	Fetal Intestine Large	intestine

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