Variant report

Variant	rs975722
Chromosome Location	chr7:117332914-117332915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117332210-117336769	GM12878	blood:
2	7:117100350-117112126..7:117332210-117336769	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10266794	0.83[ASN][1000 genomes]
rs117243	0.88[YRI][hapmap]
rs1208524	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208525	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208526	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1208528	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12534186	0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12672572	0.92[ASN][1000 genomes]
rs13237279	0.88[ASN][1000 genomes]
rs177284	0.92[ASN][1000 genomes]
rs1896885	0.87[ASN][1000 genomes]
rs2106155	0.84[CHB][hapmap];0.88[YRI][hapmap]
rs213953	0.88[YRI][hapmap]
rs213963	0.88[YRI][hapmap]
rs213964	0.88[YRI][hapmap]
rs213965	0.84[ASW][hapmap];0.88[YRI][hapmap]
rs213966	0.88[YRI][hapmap]
rs213967	0.88[YRI][hapmap]
rs213968	0.88[YRI][hapmap]
rs213971	0.84[ASW][hapmap];0.88[YRI][hapmap]
rs213977	0.92[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap]
rs213983	0.81[ASN][1000 genomes]
rs213985	0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs213987	0.89[CHB][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs214152	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs214160	0.94[ASN][1000 genomes]
rs214161	0.93[ASN][1000 genomes]
rs214167	0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs2237726	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2246450	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2254742	0.89[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2283058	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2299445	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2402229	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34257228	0.88[ASN][1000 genomes]
rs34445757	0.83[ASN][1000 genomes]
rs35278595	0.83[ASN][1000 genomes]
rs3735645	1.00[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4148724	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs4373465	0.88[ASN][1000 genomes]
rs6466619	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6970681	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6975912	0.88[ASN][1000 genomes]
rs6978581	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7777807	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7793030	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs7797932	0.89[CHB][hapmap];0.93[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs975722	ING3	cis	parietal	SCAN
rs975722	PPP1R3A	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117335000	Weak transcription	Dnd41	blood
2	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117330800-117337800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:117331200-117335000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:117331200-117335000	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117332600-117333000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:117332800-117333000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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