Variant report

Variant	rs13237279
Chromosome Location	chr7:117314915-117314916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
2	chr7:117314542..117317864-chr7:117323534..117325952,3	K562	blood:
3	chr7:117314642..117317568-chr7:117317607..117319396,2	MCF-7	breast:
4	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:
5	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10266794	0.86[ASN][1000 genomes]
rs1208524	0.85[ASN][1000 genomes]
rs1208525	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs1208526	0.86[ASN][1000 genomes]
rs1208528	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12534186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672572	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469486	0.81[CEU][hapmap]
rs177284	0.94[ASN][1000 genomes]
rs1896885	0.91[ASN][1000 genomes]
rs2106155	0.94[CHB][hapmap]
rs213977	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs213983	0.82[ASN][1000 genomes]
rs213985	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs213987	1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs214152	0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs214160	0.94[ASN][1000 genomes]
rs214161	0.93[ASN][1000 genomes]
rs214167	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs2237721	1.00[CEU][hapmap]
rs2237725	1.00[CEU][hapmap]
rs2237726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2246450	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2254742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2283054	1.00[CEU][hapmap]
rs2283058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2402229	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs34257228	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34445757	0.86[ASN][1000 genomes]
rs35278595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808183	1.00[CEU][hapmap]
rs4148682	1.00[CEU][hapmap]
rs4148698	1.00[CEU][hapmap]
rs4148703	1.00[CEU][hapmap]
rs4148709	1.00[CEU][hapmap]
rs4148714	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4148724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373465	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6970681	0.82[ASN][1000 genomes]
rs6975912	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978581	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs7777807	0.81[ASN][1000 genomes]
rs7784537	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7793030	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs7797932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs975722	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
2	chr7:117312400-117317200	Enhancers	Fetal Intestine Large	intestine
3	chr7:117312800-117317400	Enhancers	Fetal Intestine Small	intestine
4	chr7:117313000-117316400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:117313200-117315400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:117313200-117316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:117313200-117317000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:117313400-117315000	Enhancers	Stomach Mucosa	stomach
9	chr7:117313400-117315000	Enhancers	Dnd41	blood
10	chr7:117313600-117315400	Weak transcription	NHLF	lung
11	chr7:117313600-117315800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:117313800-117315600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:117313800-117315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:117313800-117316000	Weak transcription	Pancreas	Pancrea
15	chr7:117313800-117316200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:117313800-117316200	Weak transcription	Right Atrium	heart
17	chr7:117314000-117315000	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:117314000-117315000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:117314000-117315000	Enhancers	Brain Substantia Nigra	brain
20	chr7:117314000-117315400	Weak transcription	Hela-S3	cervix
21	chr7:117314000-117315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:117314000-117315600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:117314000-117315600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:117314000-117315800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:117314000-117315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:117314000-117315800	Weak transcription	Adipose Nuclei	Adipose
27	chr7:117314000-117315800	Weak transcription	Colonic Mucosa	Colon
28	chr7:117314000-117316000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:117314000-117316000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:117314000-117316400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr7:117314000-117317200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:117314200-117315000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr7:117314200-117315000	Enhancers	Brain Hippocampus Middle	brain
34	chr7:117314200-117315000	Weak transcription	A549	lung
35	chr7:117314200-117317400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:117314400-117315000	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr7:117314400-117315000	Enhancers	Fetal Thymus	thymus
38	chr7:117314400-117315600	Weak transcription	Brain Angular Gyrus	brain
39	chr7:117314400-117315800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:117314600-117315000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:117314600-117315000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:117314600-117315200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:117314600-117316200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:117314800-117315000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr7:117314800-117315000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr7:117314800-117315200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:117314800-117315200	Enhancers	Rectal Mucosa Donor 29	rectum

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