Variant report

Variant	rs214161
Chromosome Location	chr7:117319033-117319034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117303758..117306592-chr7:117317901..117319911,2	K562	blood:
2	chr7:117314642..117317568-chr7:117317607..117319396,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1208524	0.90[ASN][1000 genomes]
rs1208525	0.85[CHB][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs1208526	0.91[ASN][1000 genomes]
rs1208528	0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs12534186	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12672572	0.89[ASN][1000 genomes]
rs13237279	0.93[ASN][1000 genomes]
rs177284	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1896885	0.84[ASN][1000 genomes]
rs2106155	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs213977	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs213983	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs213985	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs213987	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs214152	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs214160	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs214167	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237726	0.95[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2246450	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2254742	0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2283058	0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299445	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2402229	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs34257228	0.85[ASN][1000 genomes]
rs34445757	0.80[ASN][1000 genomes]
rs35278595	0.88[ASN][1000 genomes]
rs4148724	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4373465	0.85[ASN][1000 genomes]
rs6970681	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6975912	0.93[ASN][1000 genomes]
rs6978581	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs7777807	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7793030	0.83[CHB][hapmap]
rs7797932	0.95[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs975722	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117315000-117326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117316400-117322200	Weak transcription	A549	lung
3	chr7:117316400-117323000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:117317200-117320800	Weak transcription	Hela-S3	cervix
5	chr7:117317200-117322000	Weak transcription	Fetal Intestine Large	intestine
6	chr7:117317200-117322000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:117317200-117323400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:117317200-117326000	Weak transcription	Dnd41	blood
9	chr7:117317400-117321800	Weak transcription	Fetal Intestine Small	intestine

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