Variant report

Variant	rs10953844
Chromosome Location	chr7:117065787-117065788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117059918..117062374-chr7:117064029..117066058,2	K562	blood:
2	chr7:117059565..117061568-chr7:117064558..117067461,3	K562	blood:
3	7:117065049-117068137..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
4	chr7:117061266..117063418-chr7:117064588..117066201,2	MCF-7	breast:
5	chr7:117064635..117066153-chr7:117066850..117069592,2	K562	blood:

Variant related genes	Relation type
ENSG00000154438	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10249651	0.98[ASN][1000 genomes]
rs10255917	0.92[ASN][1000 genomes]
rs10264075	0.90[ASN][1000 genomes]
rs10278130	0.92[ASN][1000 genomes]
rs1029396	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10953841	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953845	0.99[ASN][1000 genomes]
rs10953846	0.96[ASN][1000 genomes]
rs11769166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333572	0.94[ASN][1000 genomes]
rs12537601	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13222797	0.86[ASN][1000 genomes]
rs13245795	0.91[ASN][1000 genomes]
rs177068	0.87[ASN][1000 genomes]
rs177070	0.86[ASN][1000 genomes]
rs2027946	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2051714	0.85[EUR][1000 genomes]
rs2051718	0.87[ASN][1000 genomes]
rs2078967	0.91[ASN][1000 genomes]
rs2188158	0.94[EUR][1000 genomes]
rs2188555	0.94[ASN][1000 genomes]
rs2237721	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237725	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2239957	0.82[EUR][1000 genomes]
rs2283054	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2896224	0.91[ASN][1000 genomes]
rs34256873	0.87[ASN][1000 genomes]
rs34456592	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3926643	0.88[ASN][1000 genomes]
rs4148682	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4148698	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4148703	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4148709	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4148713	0.85[AFR][1000 genomes]
rs43025	0.87[ASN][1000 genomes]
rs43026	0.82[ASN][1000 genomes]
rs43027	0.87[ASN][1000 genomes]
rs43028	0.87[ASN][1000 genomes]
rs43029	0.87[ASN][1000 genomes]
rs43030	0.87[ASN][1000 genomes]
rs43031	0.86[ASN][1000 genomes]
rs43032	0.87[ASN][1000 genomes]
rs43033	0.87[ASN][1000 genomes]
rs43034	0.89[ASN][1000 genomes]
rs43035	0.85[ASN][1000 genomes]
rs43036	0.85[ASN][1000 genomes]
rs4458806	0.90[ASN][1000 genomes]
rs4727849	0.89[ASN][1000 genomes]
rs4727850	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4730786	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466614	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6960356	0.90[ASN][1000 genomes]
rs6966836	0.89[ASN][1000 genomes]
rs6966838	0.96[ASN][1000 genomes]
rs6972168	0.92[ASN][1000 genomes]
rs6979185	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs713134	0.84[ASN][1000 genomes]
rs72603594	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72603595	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7357267	0.88[ASN][1000 genomes]
rs739517	0.83[EUR][1000 genomes]
rs7784156	0.96[ASN][1000 genomes]
rs7797163	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7803222	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7805063	0.94[ASN][1000 genomes]
rs7808424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810506	0.82[ASN][1000 genomes]
rs9792104	0.90[ASN][1000 genomes]
rs989727	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs994996	0.96[ASN][1000 genomes]
rs994997	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117064400-117066000	Enhancers	GM12878-XiMat	blood

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