Variant report

Variant	rs7797163
Chromosome Location	chr7:117111431-117111432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117100350-117112126..7:117341506-117356953	GM12878	blood:
2	chr7:117108067..117110269-chr7:117111131..117113767,2	K562	blood:
3	chr7:117107707..117110294-chr7:117111075..117113526,2	MCF-7	breast:
4	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
5	7:116580605-116585719..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000222150	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1029396	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10953841	0.88[EUR][1000 genomes]
rs10953843	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10953844	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11769166	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12537601	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13222797	0.84[ASN][1000 genomes]
rs13245795	0.85[ASN][1000 genomes]
rs177068	0.84[ASN][1000 genomes]
rs177070	0.84[ASN][1000 genomes]
rs2027946	0.84[EUR][1000 genomes]
rs2051714	0.81[EUR][1000 genomes]
rs2078967	0.85[ASN][1000 genomes]
rs2188158	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237721	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2237725	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2283054	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2896224	0.85[ASN][1000 genomes]
rs34256873	0.85[ASN][1000 genomes]
rs34456592	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4148682	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4148698	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4148703	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs43025	0.85[ASN][1000 genomes]
rs43026	0.80[ASN][1000 genomes]
rs43027	0.85[ASN][1000 genomes]
rs43028	0.85[ASN][1000 genomes]
rs43029	0.85[ASN][1000 genomes]
rs43030	0.85[ASN][1000 genomes]
rs43031	0.84[ASN][1000 genomes]
rs43032	0.85[ASN][1000 genomes]
rs43033	0.85[ASN][1000 genomes]
rs43034	0.84[ASN][1000 genomes]
rs43035	0.88[ASN][1000 genomes]
rs43036	0.88[ASN][1000 genomes]
rs4458806	0.83[ASN][1000 genomes]
rs4730786	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6972168	0.83[ASN][1000 genomes]
rs6979185	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs713134	0.87[ASN][1000 genomes]
rs72603594	0.92[EUR][1000 genomes]
rs72603595	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7803222	0.84[EUR][1000 genomes]
rs7808424	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7810506	0.85[ASN][1000 genomes]
rs9792104	0.84[ASN][1000 genomes]
rs989727	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117110400-117113200	Enhancers	Dnd41	blood
2	chr7:117110600-117113400	Enhancers	Fetal Heart	heart
3	chr7:117111200-117112000	Weak transcription	Small Intestine	intestine
4	chr7:117111200-117112600	Weak transcription	Brain Substantia Nigra	brain
5	chr7:117111200-117112600	Enhancers	GM12878-XiMat	blood
6	chr7:117111200-117113600	Weak transcription	Pancreas	Pancrea
7	chr7:117111400-117111800	Weak transcription	Brain Hippocampus Middle	brain

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