Variant report

Variant	rs13245795
Chromosome Location	chr7:117089889-117089890
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10249651	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10255917	0.87[ASN][1000 genomes]
rs10264075	0.83[ASN][1000 genomes]
rs10278130	0.87[ASN][1000 genomes]
rs1029396	0.85[ASN][1000 genomes]
rs10953843	0.87[ASN][1000 genomes]
rs10953844	0.91[ASN][1000 genomes]
rs10953845	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953846	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769166	0.92[ASN][1000 genomes]
rs12333572	0.89[ASN][1000 genomes]
rs12537601	0.85[ASN][1000 genomes]
rs13222797	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177068	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177070	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2051718	0.83[ASN][1000 genomes]
rs2078967	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188555	0.89[ASN][1000 genomes]
rs2283054	0.89[ASN][1000 genomes]
rs254536	0.85[EUR][1000 genomes]
rs2896224	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256873	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3926643	0.83[ASN][1000 genomes]
rs39312	0.81[EUR][1000 genomes]
rs39315	0.84[EUR][1000 genomes]
rs39317	0.85[EUR][1000 genomes]
rs39324	0.86[EUR][1000 genomes]
rs4148682	0.91[ASN][1000 genomes]
rs43025	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43026	0.91[ASN][1000 genomes]
rs43027	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43028	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43029	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43030	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43031	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43032	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43033	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43034	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43035	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs43036	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4458806	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4727849	0.84[ASN][1000 genomes]
rs4727850	0.90[ASN][1000 genomes]
rs4730786	0.97[ASN][1000 genomes]
rs6960356	0.83[ASN][1000 genomes]
rs6966836	0.85[ASN][1000 genomes]
rs6966838	0.91[ASN][1000 genomes]
rs6972168	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6979185	0.87[ASN][1000 genomes]
rs713134	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72603594	0.85[ASN][1000 genomes]
rs72603595	0.85[ASN][1000 genomes]
rs7357267	0.83[ASN][1000 genomes]
rs756665	0.82[EUR][1000 genomes]
rs7784156	0.91[ASN][1000 genomes]
rs7797163	0.85[ASN][1000 genomes]
rs7805063	0.87[ASN][1000 genomes]
rs7808424	0.94[ASN][1000 genomes]
rs7810506	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885993	0.82[EUR][1000 genomes]
rs9792104	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989727	0.84[ASN][1000 genomes]
rs994996	0.88[ASN][1000 genomes]
rs994997	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117089800-117092800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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