Variant report

Variant	rs43035
Chromosome Location	chr7:117113624-117113625
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117108067..117110269-chr7:117111131..117113767,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10249651	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10255917	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10264075	0.87[EUR][1000 genomes]
rs10278130	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1029396	0.81[CHB][hapmap]
rs10487365	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10953843	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs10953844	0.85[ASN][1000 genomes]
rs10953845	0.85[ASN][1000 genomes]
rs10953846	0.88[ASN][1000 genomes]
rs117243	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs11769166	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs12333572	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12535986	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs13222797	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13245795	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13438309	0.83[EUR][1000 genomes]
rs177068	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs177070	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051718	0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2078967	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2082056	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs213934	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs213935	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs213936	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs213937	0.92[EUR][1000 genomes]
rs213942	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs213943	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs213946	0.90[EUR][1000 genomes]
rs213950	0.96[CEU][hapmap]
rs213953	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs213957	0.82[EUR][1000 genomes]
rs213961	0.80[EUR][1000 genomes]
rs213963	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213964	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213965	0.89[CEU][hapmap]
rs213966	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213967	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213968	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213970	0.81[EUR][1000 genomes]
rs213971	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs213973	0.81[EUR][1000 genomes]
rs213974	0.81[EUR][1000 genomes]
rs2157946	0.81[CHB][hapmap]
rs2188555	0.87[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237722	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2283054	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2518873	0.86[EUR][1000 genomes]
rs2896224	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34256873	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3926643	0.80[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs4148682	0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs43025	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43026	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs43027	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43028	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43029	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43030	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43031	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43033	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43034	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43036	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458806	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727849	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4727850	0.84[ASN][1000 genomes]
rs4727851	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4730778	0.82[CHB][hapmap]
rs4730786	0.96[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs6466611	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6960356	0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs6966836	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6966838	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6972168	0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6979185	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs713134	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs718829	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs725188	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7357267	0.87[EUR][1000 genomes]
rs756665	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7784156	0.83[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797163	0.88[ASN][1000 genomes]
rs7805063	0.86[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7808424	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7810506	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs885993	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9792104	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs980574	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs994996	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs994997	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117112200-117114000	Weak transcription	Small Intestine	intestine
2	chr7:117112800-117113800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:117113200-117119200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:117113600-117113800	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links