Variant report

Variant	rs213973
Chromosome Location	chr7:117235886-117235887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10487369	0.82[ASN][1000 genomes]
rs10953847	0.86[ASN][1000 genomes]
rs117243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770639	0.82[ASN][1000 genomes]
rs12533524	0.86[ASN][1000 genomes]
rs12538252	0.82[ASN][1000 genomes]
rs1429566	0.82[ASN][1000 genomes]
rs1469486	0.96[ASN][1000 genomes]
rs177070	0.81[EUR][1000 genomes]
rs1896886	0.88[ASN][1000 genomes]
rs1896887	0.88[ASN][1000 genomes]
rs1896888	0.86[ASN][1000 genomes]
rs2027944	0.85[ASN][1000 genomes]
rs2027945	0.86[ASN][1000 genomes]
rs2078753	0.98[ASN][1000 genomes]
rs2082056	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213934	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213935	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs213936	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs213937	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs213942	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs213943	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs213946	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213953	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213955	0.97[ASN][1000 genomes]
rs213956	0.96[ASN][1000 genomes]
rs213957	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213958	0.98[ASN][1000 genomes]
rs213961	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213963	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188159	0.81[ASN][1000 genomes]
rs2237722	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2237724	0.81[ASN][1000 genomes]
rs2237725	0.83[ASN][1000 genomes]
rs2283057	0.88[ASN][1000 genomes]
rs2402204	0.81[ASN][1000 genomes]
rs2402205	0.81[ASN][1000 genomes]
rs2402228	0.97[ASN][1000 genomes]
rs2518873	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34456592	0.83[ASN][1000 genomes]
rs34683806	0.82[ASN][1000 genomes]
rs34855237	0.86[ASN][1000 genomes]
rs35388491	0.81[ASN][1000 genomes]
rs35608825	0.82[ASN][1000 genomes]
rs3808183	0.97[ASN][1000 genomes]
rs3808184	0.96[ASN][1000 genomes]
rs3808185	0.96[ASN][1000 genomes]
rs3808186	0.82[ASN][1000 genomes]
rs4148689	0.81[ASN][1000 genomes]
rs4148696	0.82[ASN][1000 genomes]
rs4148697	0.82[ASN][1000 genomes]
rs4148699	0.83[ASN][1000 genomes]
rs4148703	0.83[ASN][1000 genomes]
rs4148706	0.86[ASN][1000 genomes]
rs4148709	0.95[ASN][1000 genomes]
rs4148711	0.98[ASN][1000 genomes]
rs4148713	0.98[ASN][1000 genomes]
rs43025	0.81[EUR][1000 genomes]
rs43027	0.81[EUR][1000 genomes]
rs43028	0.81[EUR][1000 genomes]
rs43030	0.81[EUR][1000 genomes]
rs43031	0.81[EUR][1000 genomes]
rs43033	0.81[EUR][1000 genomes]
rs43034	0.81[EUR][1000 genomes]
rs43035	0.81[EUR][1000 genomes]
rs6466614	0.94[ASN][1000 genomes]
rs6949974	0.97[ASN][1000 genomes]
rs6951141	0.81[ASN][1000 genomes]
rs6957317	0.81[ASN][1000 genomes]
rs6969138	0.83[ASN][1000 genomes]
rs6977764	0.82[ASN][1000 genomes]
rs6979652	0.98[ASN][1000 genomes]
rs713134	0.80[EUR][1000 genomes]
rs718829	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs725188	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs739378	0.85[ASN][1000 genomes]
rs756665	0.82[EUR][1000 genomes]
rs7786196	0.81[ASN][1000 genomes]
rs7803222	0.84[ASN][1000 genomes]
rs7810506	0.80[EUR][1000 genomes]
rs885993	0.81[EUR][1000 genomes]
rs957461	0.82[ASN][1000 genomes]
rs980574	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv608257	chr7:117229167-117241394	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117231000-117236000	Weak transcription	Colonic Mucosa	Colon
2	chr7:117232600-117236000	Weak transcription	Pancreas	Pancrea
3	chr7:117233000-117245000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117234600-117236200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr7:117234600-117240400	Weak transcription	A549	lung
6	chr7:117235000-117237600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr7:117235200-117237400	Weak transcription	Dnd41	blood
8	chr7:117235600-117236200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
9	chr7:117235600-117238200	Strong transcription	Fetal Intestine Small	intestine
10	chr7:117235800-117236800	ZNF genes & repeats	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links