Variant report

Variant	rs177070
Chromosome Location	chr7:117102394-117102395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117100350-117112126..7:117341506-117356953	GM12878	blood:
2	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
3	7:116580605-116585719..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo
4	chr7:117101401..117103711-chr7:117353443..117355432,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000222150	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10249651	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10255917	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264075	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10278130	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1029396	0.80[ASN][1000 genomes]
rs10953843	0.83[ASN][1000 genomes]
rs10953844	0.86[ASN][1000 genomes]
rs10953845	0.87[ASN][1000 genomes]
rs10953846	0.89[ASN][1000 genomes]
rs117243	0.82[EUR][1000 genomes]
rs11769166	0.87[ASN][1000 genomes]
rs12333572	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12537601	0.81[ASN][1000 genomes]
rs13222797	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13245795	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13438309	0.81[EUR][1000 genomes]
rs177068	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2051718	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2078967	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2082056	0.86[EUR][1000 genomes]
rs213934	0.85[EUR][1000 genomes]
rs213935	0.91[EUR][1000 genomes]
rs213936	0.89[EUR][1000 genomes]
rs213937	0.90[EUR][1000 genomes]
rs213942	0.91[EUR][1000 genomes]
rs213943	0.91[EUR][1000 genomes]
rs213946	0.88[EUR][1000 genomes]
rs213953	0.85[EUR][1000 genomes]
rs213957	0.80[EUR][1000 genomes]
rs213961	0.80[EUR][1000 genomes]
rs213963	0.81[EUR][1000 genomes]
rs213964	0.81[EUR][1000 genomes]
rs213966	0.81[EUR][1000 genomes]
rs213967	0.81[EUR][1000 genomes]
rs213968	0.81[EUR][1000 genomes]
rs213970	0.81[EUR][1000 genomes]
rs213971	0.82[EUR][1000 genomes]
rs213973	0.81[EUR][1000 genomes]
rs213974	0.81[EUR][1000 genomes]
rs2188555	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237722	0.90[EUR][1000 genomes]
rs2283054	0.89[ASN][1000 genomes]
rs2518873	0.84[EUR][1000 genomes]
rs2896224	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34256873	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3926643	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4148682	0.90[ASN][1000 genomes]
rs43025	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43026	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs43027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43029	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43030	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs43031	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43032	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43033	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43034	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43035	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43036	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4458806	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4727849	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4727850	0.85[ASN][1000 genomes]
rs4730786	0.96[ASN][1000 genomes]
rs6960356	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6966836	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6966838	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6972168	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979185	0.83[ASN][1000 genomes]
rs713134	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs718829	0.86[EUR][1000 genomes]
rs725188	0.89[EUR][1000 genomes]
rs72603594	0.80[ASN][1000 genomes]
rs72603595	0.81[ASN][1000 genomes]
rs7357267	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs756665	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7784156	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7797163	0.84[ASN][1000 genomes]
rs7805063	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7808424	0.89[ASN][1000 genomes]
rs7810506	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs885993	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9792104	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs980574	0.91[EUR][1000 genomes]
rs994996	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994997	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117100600-117102600	Weak transcription	Dnd41	blood

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