Variant report

Variant	rs3926643
Chromosome Location	chr7:117027432-117027433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117023478..117025357-chr7:117025624..117027570,2	K562	blood:
2	chr7:117026471..117028516-chr7:117031449..117034908,3	K562	blood:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10249651	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10255917	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10264075	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10278130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1029396	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs10487365	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10487368	0.85[CHB][hapmap]
rs10487369	0.86[CHB][hapmap]
rs10953841	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs10953843	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs10953844	0.88[ASN][1000 genomes]
rs10953845	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10953846	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10953847	0.85[CHB][hapmap]
rs11769166	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs12333572	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535986	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs12537601	0.82[CHB][hapmap];0.95[ASN][1000 genomes]
rs12538252	0.86[CHB][hapmap]
rs12673260	0.86[CHB][hapmap]
rs13222797	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13245795	0.83[ASN][1000 genomes]
rs1429566	0.85[CHB][hapmap]
rs1557630	0.85[CHB][hapmap]
rs177068	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs177070	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1896886	0.85[CHB][hapmap]
rs1896887	0.85[CHB][hapmap]
rs1896888	0.85[CHB][hapmap]
rs2027944	0.86[CHB][hapmap]
rs2027945	0.85[CHB][hapmap]
rs2051718	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2078967	0.83[ASN][1000 genomes]
rs2082056	0.80[CEU][hapmap]
rs213935	0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs213936	0.86[CHB][hapmap]
rs213937	0.80[EUR][1000 genomes]
rs213942	0.82[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs213943	0.80[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs213946	0.86[CHB][hapmap]
rs213950	0.85[CHB][hapmap]
rs2157946	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2188159	0.86[CHB][hapmap]
rs2188555	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2237721	0.85[CHB][hapmap]
rs2237722	0.86[CHB][hapmap]
rs2237723	0.85[CHB][hapmap]
rs2237724	0.85[CHB][hapmap]
rs2237725	0.86[CHB][hapmap]
rs2239957	0.83[ASN][1000 genomes]
rs2283054	0.95[CHB][hapmap]
rs2283055	0.85[CHB][hapmap]
rs2283056	0.86[CHB][hapmap]
rs2283057	0.86[CHB][hapmap]
rs254536	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2896224	0.83[ASN][1000 genomes]
rs34256873	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3757802	0.86[CHB][hapmap]
rs3808185	0.80[CHB][hapmap]
rs3808186	0.85[CHB][hapmap]
rs39312	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs39315	0.85[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs39317	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs39324	0.86[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4148682	0.91[CHB][hapmap]
rs4148686	0.86[CHB][hapmap]
rs4148687	0.86[CHB][hapmap]
rs4148688	0.85[CHB][hapmap]
rs4148689	0.85[CHB][hapmap]
rs4148690	0.86[CHB][hapmap]
rs4148691	0.86[CHB][hapmap]
rs4148692	0.86[CHB][hapmap]
rs4148696	0.86[CHB][hapmap]
rs4148697	0.86[CHB][hapmap]
rs4148698	0.86[CHB][hapmap]
rs4148699	0.85[CHB][hapmap]
rs4148703	0.85[CHB][hapmap]
rs4148706	0.85[CHB][hapmap]
rs43025	0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43027	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43028	0.80[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43029	0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43030	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs43031	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs43032	0.80[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43033	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs43034	0.80[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs43035	0.87[EUR][1000 genomes]
rs43036	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs4458806	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727850	0.91[ASN][1000 genomes]
rs4727851	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4730778	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4730786	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs6466611	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6466613	0.86[CHB][hapmap]
rs6957317	0.86[CHB][hapmap]
rs6960356	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966836	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966838	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6969138	0.85[CHB][hapmap]
rs6972168	0.85[ASN][1000 genomes]
rs6977764	0.86[CHB][hapmap]
rs6979185	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs713134	0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs718829	0.82[CEU][hapmap]
rs725188	0.86[CEU][hapmap]
rs72603594	0.91[ASN][1000 genomes]
rs72603595	0.95[ASN][1000 genomes]
rs7357267	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs739517	0.86[CHB][hapmap]
rs756665	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs7784156	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793127	0.86[CHB][hapmap]
rs7805063	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7808424	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7810506	0.91[CHB][hapmap];0.87[EUR][1000 genomes]
rs885993	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs957461	0.82[CHB][hapmap]
rs9792104	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs980574	0.80[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs989727	0.94[ASN][1000 genomes]
rs994996	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994997	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117020600-117028000	Enhancers	Hela-S3	cervix

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