Variant report

Variant	rs713134
Chromosome Location	chr7:117115256-117115257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117113776..117115574-chr7:117115757..117117512,2	MCF-7	breast:
2	chr7:117115241..117117572-chr7:117117727..117119915,2	K562	blood:
3	7:117114628-117119361..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
4	7:116610596-116619447..7:117114628-117119361	H1-hESC	embryonic stem cell:	embryo
5	7:117114628-117119361..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000213050	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10249651	0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10255917	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10264075	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10278130	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1029396	0.86[CHB][hapmap]
rs10487365	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10487368	0.81[CHB][hapmap]
rs10487369	0.82[CHB][hapmap]
rs10953841	0.82[CHB][hapmap]
rs10953843	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs10953844	0.84[ASN][1000 genomes]
rs10953845	0.85[ASN][1000 genomes]
rs10953846	0.87[ASN][1000 genomes]
rs10953847	0.81[CHB][hapmap]
rs117243	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11769166	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs12333572	0.83[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12535986	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12538252	0.81[CHB][hapmap]
rs12673260	0.82[CHB][hapmap]
rs13222797	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13245795	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438309	0.83[EUR][1000 genomes]
rs1429566	0.81[CHB][hapmap]
rs1557630	0.81[CHB][hapmap]
rs177068	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177070	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1896886	0.81[CHB][hapmap]
rs1896887	0.81[CHB][hapmap]
rs1896888	0.81[CHB][hapmap]
rs2027944	0.82[CHB][hapmap]
rs2027945	0.81[CHB][hapmap]
rs2051718	0.80[CEU][hapmap];0.87[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2078967	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2082056	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs213934	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs213935	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs213936	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs213937	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213942	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs213943	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs213946	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs213950	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs213953	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs213957	0.82[EUR][1000 genomes]
rs213963	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs213964	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs213965	0.85[CEU][hapmap]
rs213966	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs213967	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs213968	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs213970	0.80[EUR][1000 genomes]
rs213971	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs213973	0.80[EUR][1000 genomes]
rs213974	0.80[EUR][1000 genomes]
rs2157946	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs2188159	0.82[CHB][hapmap]
rs2188555	0.80[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237721	0.81[CHB][hapmap]
rs2237722	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2237723	0.81[CHB][hapmap]
rs2237724	0.81[CHB][hapmap]
rs2237725	0.82[CHB][hapmap]
rs2283054	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2283055	0.81[CHB][hapmap]
rs2283056	0.82[CHB][hapmap]
rs2283057	0.82[CHB][hapmap]
rs2518873	0.86[EUR][1000 genomes]
rs254536	0.82[CHB][hapmap]
rs2896224	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34256873	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757802	0.82[CHB][hapmap]
rs3808186	0.81[CHB][hapmap]
rs3926643	0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs39312	0.81[CHB][hapmap]
rs39315	0.81[CHB][hapmap]
rs39317	0.81[CHB][hapmap]
rs39324	0.82[CHB][hapmap]
rs4148682	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4148686	0.82[CHB][hapmap]
rs4148687	0.82[CHB][hapmap]
rs4148688	0.81[CHB][hapmap]
rs4148689	0.81[CHB][hapmap]
rs4148690	0.82[CHB][hapmap]
rs4148691	0.82[CHB][hapmap]
rs4148692	0.82[CHB][hapmap]
rs4148696	0.82[CHB][hapmap]
rs4148697	0.82[CHB][hapmap]
rs4148698	0.82[CHB][hapmap]
rs4148699	0.81[CHB][hapmap]
rs4148703	0.81[CHB][hapmap]
rs4148706	0.81[CHB][hapmap]
rs43025	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43026	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs43027	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43029	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43030	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43031	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43033	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs43034	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs43035	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs43036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4458806	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4727849	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4727850	0.83[ASN][1000 genomes]
rs4727851	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4730778	0.87[CHB][hapmap]
rs4730786	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6466611	0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6466613	0.82[CHB][hapmap]
rs6957317	0.82[CHB][hapmap]
rs6960356	0.82[CEU][hapmap];0.86[CHB][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6966836	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6966838	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6969138	0.81[CHB][hapmap]
rs6972168	0.83[CEU][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6977764	0.82[CHB][hapmap]
rs6979185	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs718829	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs725188	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7357267	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs739517	0.82[CHB][hapmap]
rs756665	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7784156	0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7793127	0.82[CHB][hapmap]
rs7797163	0.87[ASN][1000 genomes]
rs7805063	0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7808424	0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7810506	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs885993	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9792104	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs980574	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs994996	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs994997	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117113200-117119200	Weak transcription	Brain Hippocampus Middle	brain

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