Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116957165-116964911..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1029396	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953841	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953843	0.82[EUR][1000 genomes]
rs10953844	0.82[EUR][1000 genomes]
rs11769166	0.82[EUR][1000 genomes]
rs12537601	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051718	0.82[ASN][1000 genomes]
rs2237721	0.82[EUR][1000 genomes]
rs2283054	0.82[EUR][1000 genomes]
rs254536	0.97[ASN][1000 genomes]
rs3926643	0.83[ASN][1000 genomes]
rs39312	0.94[ASN][1000 genomes]
rs39315	0.96[ASN][1000 genomes]
rs39317	0.96[ASN][1000 genomes]
rs39324	0.93[ASN][1000 genomes]
rs4148682	0.82[EUR][1000 genomes]
rs4730786	0.81[EUR][1000 genomes]
rs6966836	0.81[ASN][1000 genomes]
rs6979185	0.82[EUR][1000 genomes]
rs72603594	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72603595	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7357267	0.81[ASN][1000 genomes]
rs739517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808424	0.82[EUR][1000 genomes]
rs989727	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116931800-116961600	Weak transcription	Placenta	Placenta
2	chr7:116952400-116960600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:116955400-116960200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116958800-116960000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:116958800-116960400	Genic enhancers	Fetal Lung	lung

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