Variant report

Variant	rs17139830
Chromosome Location	chr7:117062796-117062797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117061385..117064325-chr7:117074791..117077607,2	MCF-7	breast:
2	chr7:117061266..117063418-chr7:117064588..117066201,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1029397	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487372	1.00[JPT][hapmap]
rs11978434	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139859	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17139881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228946	1.00[JPT][hapmap]
rs34180375	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34442917	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652497	1.00[ASN][1000 genomes]
rs34849722	1.00[ASN][1000 genomes]
rs34979995	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35071293	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35091062	0.93[EUR][1000 genomes]
rs35604119	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783977	1.00[ASN][1000 genomes]
rs35915869	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046385	1.00[ASN][1000 genomes]
rs36143281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39317	0.86[YRI][hapmap]
rs4571678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728161	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901305	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61711770	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972819	1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714649	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714651	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989727	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117062600-117063200	Enhancers	HUVEC	blood vessel

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