Variant report

Variant	rs11978434
Chromosome Location	chr7:117231852-117231853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116754962-116765597..7:117228556-117233275	Hela-S3	cervix:
2	7:115847372-115857098..7:117228556-117233275	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1029397	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10487372	1.00[JPT][hapmap]
rs11772396	0.81[TSI][hapmap]
rs17139830	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139859	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17139881	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17139943	0.81[TSI][hapmap]
rs17547853	0.86[TSI][hapmap]
rs213938	0.81[TSI][hapmap]
rs213945	0.81[TSI][hapmap]
rs213951	0.86[TSI][hapmap]
rs213952	0.86[TSI][hapmap]
rs34180375	1.00[ASN][1000 genomes]
rs34442917	1.00[ASN][1000 genomes]
rs34624661	1.00[ASN][1000 genomes]
rs34652497	1.00[ASN][1000 genomes]
rs34849722	1.00[ASN][1000 genomes]
rs34979995	1.00[ASN][1000 genomes]
rs35071293	1.00[ASN][1000 genomes]
rs35604119	1.00[ASN][1000 genomes]
rs35783977	1.00[ASN][1000 genomes]
rs35915869	1.00[ASN][1000 genomes]
rs36046385	1.00[ASN][1000 genomes]
rs36143281	1.00[ASN][1000 genomes]
rs4571678	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55728161	1.00[ASN][1000 genomes]
rs55901305	1.00[ASN][1000 genomes]
rs58707615	1.00[ASN][1000 genomes]
rs61711770	1.00[ASN][1000 genomes]
rs6943105	0.81[TSI][hapmap]
rs6972819	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6980032	0.81[CEU][hapmap]
rs73714649	1.00[ASN][1000 genomes]
rs73714651	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv608257	chr7:117229167-117241394	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117208600-117232400	Weak transcription	Pancreas	Pancrea
2	chr7:117216800-117235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:117227000-117232000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:117228400-117232000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117229000-117235600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:117229400-117232200	Enhancers	Dnd41	blood
7	chr7:117229400-117234000	Weak transcription	A549	lung
8	chr7:117230800-117232200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:117231000-117235600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:117231000-117236000	Weak transcription	Colonic Mucosa	Colon
11	chr7:117231400-117232400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:117231400-117235600	Weak transcription	Fetal Intestine Large	intestine

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