Variant report

Variant	rs11772396
Chromosome Location	chr7:117132919-117132920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10237738	0.83[CEU][hapmap]
rs11978434	0.81[TSI][hapmap]
rs17139943	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs172507	0.95[CEU][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213933	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs213938	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs213944	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs213945	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213947	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213948	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213949	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs213951	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs213952	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs213980	0.89[MEX][hapmap]
rs213981	0.89[MEX][hapmap]
rs213989	0.89[MEX][hapmap]
rs214163	0.89[MEX][hapmap]
rs2188554	1.00[ASW][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap]
rs2518881	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs35403869	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6943105	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6957018	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73480753	0.81[EUR][1000 genomes]
rs7789741	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
2	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117130800-117134200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117131000-117134600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:117131200-117139600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117132400-117133600	Enhancers	Liver	Liver
7	chr7:117132400-117134000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:117132400-117134200	Enhancers	Dnd41	blood
9	chr7:117132800-117133200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:117132800-117133800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links