Variant report

Variant	rs7789741
Chromosome Location	chr7:117206941-117206942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10237738	0.84[CEU][hapmap]
rs11772396	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17139943	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs172507	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs213933	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213938	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs213944	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs213945	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213947	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213948	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213949	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs213951	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs213952	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2518881	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs35403869	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6943105	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs6957018	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117173000-117208000	Weak transcription	Pancreas	Pancrea
2	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117202400-117212600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117203600-117207000	Enhancers	Fetal Intestine Large	intestine
5	chr7:117204200-117207000	Enhancers	Liver	Liver
6	chr7:117205200-117207000	Enhancers	Stomach Mucosa	stomach
7	chr7:117206400-117208400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:117206400-117211600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:117206400-117216800	Weak transcription	Small Intestine	intestine
10	chr7:117206600-117207000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:117206600-117217600	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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