Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117171466..117173089-chr7:117174919..117176705,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10237738	0.85[CEU][hapmap]
rs11772396	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12673260	0.89[YRI][hapmap]
rs1429566	0.92[YRI][hapmap]
rs17139943	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs172507	0.95[CEU][hapmap];1.00[EUR][1000 genomes]
rs1896887	0.84[YRI][hapmap]
rs1896888	0.84[YRI][hapmap]
rs2027945	0.84[YRI][hapmap]
rs213933	0.93[EUR][1000 genomes]
rs213938	0.95[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs213944	0.96[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213945	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs213947	0.96[EUR][1000 genomes]
rs213948	0.96[EUR][1000 genomes]
rs213949	0.95[EUR][1000 genomes]
rs213951	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs213952	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2188159	0.89[YRI][hapmap]
rs35403869	0.99[EUR][1000 genomes]
rs3757802	0.89[YRI][hapmap]
rs4148686	0.92[YRI][hapmap]
rs4148689	0.92[YRI][hapmap]
rs4148691	0.89[YRI][hapmap]
rs4148697	0.89[YRI][hapmap]
rs6466613	0.88[YRI][hapmap]
rs6943105	0.95[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6957018	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs7789741	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7793127	0.89[YRI][hapmap]
rs957461	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800675	chr7:117159386-117204462	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv970420	chr7:117172699-117173820	Enhancers Genic enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117154400-117174400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:117164400-117177600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117170800-117173000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr7:117171600-117177400	Weak transcription	Colonic Mucosa	Colon
5	chr7:117172000-117174800	Weak transcription	Dnd41	blood
6	chr7:117172400-117172800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117172400-117173000	Enhancers	Fetal Intestine Large	intestine
8	chr7:117172600-117173000	Genic enhancers	Pancreas	Pancrea
9	chr7:117172600-117173400	Enhancers	Gastric	stomach

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