Variant report

Variant	rs6943105
Chromosome Location	chr7:117156341-117156342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10225824	0.81[CEU][hapmap]
rs10237738	0.83[CEU][hapmap]
rs11772396	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11978434	0.81[TSI][hapmap]
rs12673260	0.80[YRI][hapmap]
rs17139943	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs172507	0.90[CEU][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs213933	0.91[EUR][1000 genomes]
rs213938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213944	0.90[CEU][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs213945	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs213947	0.94[EUR][1000 genomes]
rs213948	0.94[EUR][1000 genomes]
rs213949	0.93[EUR][1000 genomes]
rs213951	0.95[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs213952	0.95[CEU][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2188554	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs2518881	0.95[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35403869	0.98[EUR][1000 genomes]
rs4148686	0.80[YRI][hapmap]
rs4148689	0.80[YRI][hapmap]
rs4148691	0.80[YRI][hapmap]
rs4148697	0.80[YRI][hapmap]
rs6957018	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs7789741	0.95[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117151800-117172600	Weak transcription	Pancreas	Pancrea
2	chr7:117154400-117169600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:117154400-117170800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117154400-117174400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117154600-117164200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117155400-117163400	Weak transcription	Fetal Intestine Small	intestine

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