Variant report
| Variant | rs10225824 |
|---|---|
| Chromosome Location | chr7:117012023-117012024 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:115861595-115870968..7:117006521-117012421 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135269 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10237738 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10487367 | 0.95[CEU][hapmap];1.00[YRI][hapmap] |
| rs213938 | 0.81[CEU][hapmap] |
| rs2188554 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs39316 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs39318 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6943105 | 0.81[CEU][hapmap] |
| rs73480753 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608256 | chr7:116928371-117040117 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
