Variant report

Variant	rs2188554
Chromosome Location	chr7:117040117-117040118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10225824	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10237738	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10487367	0.94[CEU][hapmap]
rs11772396	1.00[ASW][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap]
rs17139943	0.87[GIH][hapmap]
rs172507	0.89[MEX][hapmap]
rs17547853	0.88[MEX][hapmap]
rs213938	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs213945	0.87[GIH][hapmap];0.89[MEX][hapmap]
rs213951	0.85[ASW][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.80[MKK][hapmap]
rs213952	0.87[GIH][hapmap]
rs39316	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs39318	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6943105	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs73480753	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117039400-117040800	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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