Variant report

Variant	rs213938
Chromosome Location	chr7:117164439-117164440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10225824	0.81[CEU][hapmap]
rs10237738	0.83[CEU][hapmap]
rs11772396	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11978434	0.81[TSI][hapmap]
rs12673260	0.92[YRI][hapmap]
rs1429566	0.92[YRI][hapmap]
rs17139943	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs172507	0.90[CEU][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes]
rs1896887	0.84[YRI][hapmap]
rs1896888	0.84[YRI][hapmap]
rs2027945	0.84[YRI][hapmap]
rs213933	0.91[EUR][1000 genomes]
rs213944	0.90[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs213945	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs213947	0.94[EUR][1000 genomes]
rs213948	0.94[EUR][1000 genomes]
rs213949	0.93[EUR][1000 genomes]
rs213951	0.95[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs213952	0.95[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2188159	0.92[YRI][hapmap]
rs2188554	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs2518881	0.95[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35403869	0.98[EUR][1000 genomes]
rs3757802	0.92[YRI][hapmap]
rs4148686	0.92[YRI][hapmap]
rs4148689	0.92[YRI][hapmap]
rs4148691	0.92[YRI][hapmap]
rs4148697	0.92[YRI][hapmap]
rs6466613	0.91[YRI][hapmap]
rs6943105	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6957018	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs7789741	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs7793127	0.92[YRI][hapmap]
rs957461	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800675	chr7:117159386-117204462	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3446694	chr7:117163966-117169364	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117151800-117172600	Weak transcription	Pancreas	Pancrea
2	chr7:117154400-117169600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:117154400-117170800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117154400-117174400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117163800-117170000	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117164400-117177600	Weak transcription	Duodenum Mucosa	Duodenum

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