Variant report

Variant	rs39316
Chromosome Location	chr7:116966246-116966247
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10225824	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10237738	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2188554	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs39318	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73480753	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116965000-116966400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:116965000-116966400	Enhancers	NH-A	brain
3	chr7:116965000-116966600	Weak transcription	Aorta	Aorta
4	chr7:116965600-116967400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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