Variant report

Variant	rs214163
Chromosome Location	chr7:117293552-117293553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10226907	0.86[ASN][1000 genomes]
rs10231905	0.86[ASN][1000 genomes]
rs10244694	0.86[ASN][1000 genomes]
rs10249419	1.00[ASN][1000 genomes]
rs10266116	0.81[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10272233	0.86[ASN][1000 genomes]
rs10276533	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10278481	1.00[ASN][1000 genomes]
rs1042180	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs10441245	0.86[ASN][1000 genomes]
rs10953848	1.00[ASN][1000 genomes]
rs11764070	0.86[ASN][1000 genomes]
rs11767185	1.00[ASN][1000 genomes]
rs11768272	1.00[ASN][1000 genomes]
rs11772396	0.89[MEX][hapmap]
rs11974545	0.95[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534210	1.00[ASN][1000 genomes]
rs12534233	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366912	0.86[ASN][1000 genomes]
rs1429563	0.86[ASN][1000 genomes]
rs1429568	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs1468262	0.86[ASN][1000 genomes]
rs1594189	0.86[ASN][1000 genomes]
rs17140297	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs17140352	1.00[ASN][1000 genomes]
rs172507	0.89[MEX][hapmap]
rs17451754	0.88[MEX][hapmap]
rs17452984	0.86[ASN][1000 genomes]
rs17547853	0.88[MEX][hapmap]
rs17549557	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs17550204	0.86[ASN][1000 genomes]
rs17550567	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs1800136	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs1966352	1.00[ASN][1000 genomes]
rs2059938	1.00[ASN][1000 genomes]
rs2079178	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs213945	0.89[MEX][hapmap]
rs213951	0.89[MEX][hapmap]
rs213979	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213980	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213981	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213986	0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs213988	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs214159	0.86[ASN][1000 genomes]
rs214164	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2188150	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2213958	1.00[JPT][hapmap]
rs2518879	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34331324	0.86[ASN][1000 genomes]
rs34374846	0.86[ASN][1000 genomes]
rs34541842	1.00[ASN][1000 genomes]
rs34637736	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34665848	1.00[ASN][1000 genomes]
rs34927137	0.86[ASN][1000 genomes]
rs35050470	0.95[EUR][1000 genomes]
rs35216437	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244428	0.95[EUR][1000 genomes]
rs35292549	0.86[ASN][1000 genomes]
rs35454880	1.00[ASN][1000 genomes]
rs35871198	1.00[ASN][1000 genomes]
rs35941557	0.86[ASN][1000 genomes]
rs4500028	1.00[ASN][1000 genomes]
rs4727855	0.81[CEU][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap]
rs4730793	0.86[ASN][1000 genomes]
rs4730794	0.86[ASN][1000 genomes]
rs4730795	1.00[ASN][1000 genomes]
rs4730797	1.00[ASN][1000 genomes]
rs4730798	1.00[ASN][1000 genomes]
rs4730799	0.86[ASN][1000 genomes]
rs4730801	1.00[ASN][1000 genomes]
rs4730802	1.00[ASN][1000 genomes]
rs6466618	0.86[ASN][1000 genomes]
rs6943317	0.86[ASN][1000 genomes]
rs6973257	0.86[ASN][1000 genomes]
rs6977789	1.00[ASN][1000 genomes]
rs6980032	1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[ASN][1000 genomes]
rs739797	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs739798	1.00[ASN][1000 genomes]
rs757278	1.00[ASN][1000 genomes]
rs7779353	0.86[ASN][1000 genomes]
rs7796211	0.86[ASN][1000 genomes]
rs7804816	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs214163	CTTNBP2	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117286800-117294600	Weak transcription	Hela-S3	cervix
4	chr7:117288800-117297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:117291600-117294600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:117292200-117294000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:117292200-117294000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:117292200-117294200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:117292200-117294200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:117292600-117298400	Weak transcription	Dnd41	blood
12	chr7:117292800-117294800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:117293000-117293600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:117293000-117293800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:117293000-117294000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:117293000-117294200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:117293000-117294400	Genic enhancers	Fetal Intestine Large	intestine
18	chr7:117293000-117294600	Genic enhancers	Duodenum Mucosa	Duodenum
19	chr7:117293000-117294600	Genic enhancers	Rectal Mucosa Donor 31	rectum
20	chr7:117293000-117294800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr7:117293200-117294200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:117293200-117294400	Enhancers	Esophagus	oesophagus
23	chr7:117293200-117294400	Genic enhancers	Fetal Intestine Small	intestine
24	chr7:117293400-117293800	Active TSS	iPS-20b Cell Line	embryonic stem cell

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