Variant report

Variant	rs10231905
Chromosome Location	chr7:117329970-117329971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117114628-117119361..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
2	7:116307511-116321259..7:117326534-117332210	Hela-S3	cervix:
3	7:116957165-116964911..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
4	7:116434729-116454408..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
5	7:115890993-115892266..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
6	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
7	7:116500954-116503335..7:117326534-117332210	Hela-S3	cervix:
8	7:116604327-116608063..7:117326534-117332210	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFTR-1	chr7:117329767-117329975	ENSG00000227601.1

No data

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000105976	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000228368	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	1.00[ASN][1000 genomes]
rs1429563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17452984	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550204	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34374846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	1.00[ASN][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	1.00[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4730795	0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466618	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6967118	1.00[JPT][hapmap]
rs6973257	1.00[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757278	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7779353	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804816	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117322000-117330600	Enhancers	Fetal Intestine Large	intestine
2	chr7:117327000-117335000	Weak transcription	Dnd41	blood
3	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:117328400-117330000	Enhancers	Small Intestine	intestine
5	chr7:117328600-117331200	Enhancers	Fetal Intestine Small	intestine
6	chr7:117329600-117330200	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr7:117329800-117330000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:117329800-117330200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:117329800-117330400	Enhancers	Stomach Mucosa	stomach

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