Variant report

Variant	rs10247163
Chromosome Location	chr7:117389972-117389973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:117387122-117390750	H1-hESC	embryonic stem cell:	embryo
2	chr7:117389243..117392160-chr7:117392467..117394936,2	K562	blood:
3	chr7:117388690..117390929-chr7:117821238..117823244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap]
rs10230544	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249419	1.00[JPT][hapmap]
rs10254610	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10258815	0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	0.87[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs11768272	1.00[JPT][hapmap]
rs1468262	1.00[JPT][hapmap]
rs17140352	1.00[JPT][hapmap]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap]
rs2079178	1.00[JPT][hapmap]
rs2111204	0.83[CHD][hapmap]
rs2189388	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2193258	1.00[JPT][hapmap]
rs4730797	1.00[JPT][hapmap]
rs4730798	1.00[JPT][hapmap]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs4730802	0.91[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs4730803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs6960332	0.83[ASN][1000 genomes]
rs6967118	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap]
rs6978213	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs739797	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs739798	1.00[JPT][hapmap]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	1.00[JPT][hapmap]
rs929668	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10247163	ING3	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
5	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:117371800-117396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:117372000-117395800	Weak transcription	Fetal Intestine Small	intestine
10	chr7:117374400-117393800	Weak transcription	Fetal Heart	heart
11	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
12	chr7:117375200-117395800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:117375200-117395800	Weak transcription	Pancreas	Pancrea
14	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:117375400-117396000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
17	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
18	chr7:117379200-117395800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:117381000-117390400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:117381400-117395800	Weak transcription	Aorta	Aorta
22	chr7:117382600-117395200	Weak transcription	NHLF	lung
23	chr7:117383200-117391000	Weak transcription	Adipose Nuclei	Adipose
24	chr7:117383200-117395800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:117385000-117396000	Weak transcription	Ovary	ovary
26	chr7:117385400-117390600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:117385400-117394600	Weak transcription	Brain Germinal Matrix	brain
28	chr7:117385400-117395000	Weak transcription	Fetal Stomach	stomach
29	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:117385600-117395200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:117386000-117394800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:117386200-117391000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:117386200-117394200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:117386200-117394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:117386800-117397600	Weak transcription	Fetal Brain Male	brain
36	chr7:117387400-117390400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr7:117387400-117390600	Weak transcription	Brain Anterior Caudate	brain
38	chr7:117387400-117393600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr7:117387600-117390200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:117388000-117390200	Weak transcription	Brain Angular Gyrus	brain
42	chr7:117388000-117395000	Weak transcription	Fetal Lung	lung
43	chr7:117388000-117395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:117389600-117392200	Enhancers	Brain Hippocampus Middle	brain
45	chr7:117389600-117393400	Weak transcription	Fetal Brain Female	brain
46	chr7:117389600-117394800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:117389600-117395000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:117389800-117390000	Enhancers	Brain Substantia Nigra	brain

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