Variant report

Variant	rs739797
Chromosome Location	chr7:117368587-117368588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	0.86[ASN][1000 genomes]
rs10247163	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	0.86[ASN][1000 genomes]
rs10272233	0.86[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10276533	0.80[CEU][hapmap]
rs10278481	0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1042180	0.86[ASN][1000 genomes]
rs10441245	0.86[ASN][1000 genomes]
rs10953848	1.00[ASN][1000 genomes]
rs11764070	0.86[ASN][1000 genomes]
rs11767185	1.00[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs11974545	1.00[ASN][1000 genomes]
rs12534210	1.00[ASN][1000 genomes]
rs12534233	1.00[ASN][1000 genomes]
rs1366912	0.86[ASN][1000 genomes]
rs1429563	0.86[ASN][1000 genomes]
rs1429568	0.86[ASN][1000 genomes]
rs1468262	0.84[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1594189	0.86[ASN][1000 genomes]
rs17140297	0.86[ASN][1000 genomes]
rs17140352	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17452984	0.86[ASN][1000 genomes]
rs17549557	0.86[ASN][1000 genomes]
rs17550204	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17550567	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800136	0.86[ASN][1000 genomes]
rs1966352	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059938	1.00[ASN][1000 genomes]
rs2079178	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213980	0.83[ASN][1000 genomes]
rs213981	0.83[ASN][1000 genomes]
rs213988	0.83[ASN][1000 genomes]
rs213989	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs214159	0.86[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs214164	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs2188150	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34331324	0.86[ASN][1000 genomes]
rs34374846	0.86[ASN][1000 genomes]
rs34541842	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637736	1.00[ASN][1000 genomes]
rs34665848	1.00[ASN][1000 genomes]
rs34927137	0.86[ASN][1000 genomes]
rs35216437	1.00[ASN][1000 genomes]
rs35292549	0.86[ASN][1000 genomes]
rs35454880	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35871198	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35941557	0.86[ASN][1000 genomes]
rs4500028	1.00[ASN][1000 genomes]
rs4730793	0.86[ASN][1000 genomes]
rs4730794	0.86[ASN][1000 genomes]
rs4730795	1.00[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs4730798	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730799	0.86[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[ASN][1000 genomes]
rs4730801	0.81[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6466618	0.86[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6943317	0.86[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6973257	0.93[TSI][hapmap];0.86[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	0.86[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs757278	1.00[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7804816	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs929668	0.83[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117346600-117373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:117350200-117373800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:117353200-117384600	Weak transcription	Ovary	ovary
6	chr7:117354600-117373800	Weak transcription	Esophagus	oesophagus
7	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:117355800-117369400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:117356800-117376000	Weak transcription	NH-A	brain
12	chr7:117357200-117374800	Weak transcription	Pancreas	Pancrea
13	chr7:117357600-117375400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:117357800-117370800	Weak transcription	Fetal Intestine Large	intestine
15	chr7:117358200-117370000	Weak transcription	Fetal Kidney	kidney
16	chr7:117358400-117371400	Weak transcription	Fetal Intestine Small	intestine
17	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
19	chr7:117360200-117374000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:117360400-117369000	Weak transcription	Adipose Nuclei	Adipose
21	chr7:117360600-117374800	Weak transcription	Left Ventricle	heart
22	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:117362800-117371000	Strong transcription	Fetal Lung	lung
24	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:117364000-117375400	Strong transcription	Fetal Brain Female	brain
26	chr7:117364200-117376600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:117365000-117371600	Weak transcription	Right Atrium	heart
28	chr7:117365400-117371400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:117365400-117371600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:117365400-117373400	Weak transcription	NHLF	lung
31	chr7:117365400-117380800	Weak transcription	Fetal Brain Male	brain
32	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:117366000-117369200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:117367000-117369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:117367000-117374000	Weak transcription	Brain Germinal Matrix	brain
36	chr7:117367000-117374000	Weak transcription	Lung	lung
37	chr7:117367000-117376200	Weak transcription	Gastric	stomach
38	chr7:117367200-117370800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:117367400-117369400	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr7:117367800-117370000	Enhancers	Brain Anterior Caudate	brain
41	chr7:117367800-117370600	Enhancers	Brain Cingulate Gyrus	brain
42	chr7:117367800-117371600	Enhancers	Brain Substantia Nigra	brain
43	chr7:117367800-117371800	Enhancers	Brain Hippocampus Middle	brain
44	chr7:117368000-117368600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:117368000-117369200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr7:117368000-117369800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:117368000-117369800	Enhancers	Brain Angular Gyrus	brain
48	chr7:117368000-117370600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:117368200-117369000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr7:117368200-117369600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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