Variant report

Variant	rs10272233
Chromosome Location	chr7:117309974-117309975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1042180	0.95[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429568	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap]
rs1594189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17549557	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1800136	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs213980	0.81[CEU][hapmap]
rs213981	0.81[CEU][hapmap]
rs213986	0.95[CEU][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs2213958	0.91[EUR][1000 genomes]
rs34331324	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6943317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6977789	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
5	chr7:117306600-117313400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:117307400-117312800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117307600-117310200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:117307600-117312200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:117307600-117313400	Weak transcription	NHLF	lung
10	chr7:117307800-117310400	Weak transcription	Adipose Nuclei	Adipose
11	chr7:117307800-117312600	Weak transcription	Hela-S3	cervix
12	chr7:117308000-117310200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:117308000-117313400	Weak transcription	Dnd41	blood
14	chr7:117308200-117312400	Weak transcription	Fetal Intestine Large	intestine
15	chr7:117308200-117313000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:117308200-117313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:117308200-117313400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:117309800-117310000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:117309800-117310600	Enhancers	Pancreas	Pancrea

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