Variant report

Variant	rs1042180
Chromosome Location	chr7:117308413-117308414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:
2	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10249419	0.86[ASN][1000 genomes]
rs10266116	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276533	1.00[JPT][hapmap]
rs10278481	0.86[ASN][1000 genomes]
rs10441245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.80[GIH][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429568	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	0.81[CEU][hapmap]
rs1594189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.84[CEU][hapmap];0.86[ASN][1000 genomes]
rs17549557	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	0.86[ASN][1000 genomes]
rs1800136	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs213980	1.00[JPT][hapmap];0.85[TSI][hapmap]
rs213981	1.00[JPT][hapmap];0.84[TSI][hapmap]
rs213986	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213988	1.00[JPT][hapmap];0.84[TSI][hapmap]
rs213989	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs214159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs214164	1.00[JPT][hapmap]
rs2188150	1.00[JPT][hapmap]
rs2213958	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2518879	1.00[JPT][hapmap]
rs34331324	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	1.00[CEU][hapmap];0.92[GIH][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.86[ASN][1000 genomes]
rs4730798	0.84[CEU][hapmap];0.86[ASN][1000 genomes]
rs4730799	0.82[CEU][hapmap]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.86[ASN][1000 genomes]
rs6943317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	0.86[ASN][1000 genomes]
rs6980032	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7804816	0.82[CEU][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
3	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
6	chr7:117306600-117313400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:117307400-117312800	Weak transcription	Fetal Intestine Small	intestine
8	chr7:117307600-117310200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:117307600-117312200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:117307600-117313400	Weak transcription	NHLF	lung
11	chr7:117307800-117310400	Weak transcription	Adipose Nuclei	Adipose
12	chr7:117307800-117312600	Weak transcription	Hela-S3	cervix
13	chr7:117308000-117310200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:117308000-117313400	Weak transcription	Dnd41	blood
15	chr7:117308200-117312400	Weak transcription	Fetal Intestine Large	intestine
16	chr7:117308200-117313000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:117308200-117313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:117308200-117313400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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