Variant report

Variant	rs1429568
Chromosome Location	chr7:117305816-117305817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:117301157..117302902-chr7:117304073..117306699,2	K562	blood:
2	chr7:117255020..117257143-chr7:117304303..117306209,2	MCF-7	breast:
3	chr7:117300308..117302591-chr7:117304728..117307029,2	MCF-7	breast:
4	7:115847372-115857098..7:117305160-117306431	GM12878	blood:
5	chr7:117303758..117306592-chr7:117317901..117319911,2	K562	blood:
6	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:
7	chr7:117304804..117307634-chr7:117310196..117313135,3	MCF-7	breast:
8	7:117100350-117112126..7:117305160-117306431	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10249419	0.86[ASN][1000 genomes]
rs10266116	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276533	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10278481	0.86[ASN][1000 genomes]
rs1042180	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];0.84[GIH][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.87[GIH][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1594189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs17549557	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	0.86[ASN][1000 genomes]
rs1800136	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs213980	0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs213981	0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs213986	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213988	0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs213989	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs214159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs214164	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2188150	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2213958	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2518879	1.00[JPT][hapmap]
rs34331324	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.92[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.84[GIH][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs4730798	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs4730799	0.82[CEU][hapmap]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.86[ASN][1000 genomes]
rs6943317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	0.84[GIH][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs6980032	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7779353	0.86[MEX][hapmap]
rs7796211	0.86[MEX][hapmap]
rs7804816	0.82[CEU][hapmap];0.84[GIH][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
3	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:117302000-117306000	Weak transcription	Fetal Intestine Large	intestine
6	chr7:117302000-117306600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:117304200-117308200	Strong transcription	Duodenum Mucosa	Duodenum
9	chr7:117304400-117307800	Enhancers	Hela-S3	cervix
10	chr7:117304400-117308000	Enhancers	Dnd41	blood
11	chr7:117304400-117308200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:117304600-117308000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:117305000-117306000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:117305000-117306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:117305000-117306200	Enhancers	A549	lung
16	chr7:117305000-117306400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:117305000-117307200	Enhancers	HUVEC	blood vessel
18	chr7:117305000-117307600	Weak transcription	Esophagus	oesophagus
19	chr7:117305000-117307600	Enhancers	NHLF	lung
20	chr7:117305800-117306200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:117305800-117306600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr7:117305800-117307200	Enhancers	Placenta	Placenta
23	chr7:117305800-117308000	Enhancers	NH-A	brain

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