Variant report

Variant	rs1366912
Chromosome Location	chr7:117316601-117316602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
2	chr7:117314542..117317864-chr7:117323534..117325952,3	K562	blood:
3	chr7:117314642..117317568-chr7:117317607..117319396,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	1.00[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	0.95[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1042180	0.95[CEU][hapmap];0.88[GIH][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10441245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11767185	0.81[CEU][hapmap];0.86[ASN][1000 genomes]
rs11768272	0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.83[GIH][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1429563	1.00[ASN][1000 genomes]
rs1429568	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1468262	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1594189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140297	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17452984	1.00[ASN][1000 genomes]
rs17549557	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17550204	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1800136	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs213980	0.81[CEU][hapmap];0.96[TSI][hapmap]
rs213981	0.81[CEU][hapmap];0.95[TSI][hapmap]
rs213986	0.95[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs213988	0.96[TSI][hapmap]
rs213989	0.96[TSI][hapmap]
rs214159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs214163	0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs2213958	0.91[EUR][1000 genomes]
rs34331324	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34374846	1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	1.00[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.91[ASW][hapmap];0.95[CEU][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730795	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466618	1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6943317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6973257	1.00[ASN][1000 genomes]
rs6977789	0.82[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	0.95[CEU][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs7796168	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7796211	1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs7804816	0.87[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117312400-117317200	Enhancers	Fetal Intestine Large	intestine
2	chr7:117312800-117317400	Enhancers	Fetal Intestine Small	intestine
3	chr7:117313200-117317000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:117314000-117317200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:117314200-117317400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:117315000-117326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:117315400-117317000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:117315400-117317200	Enhancers	Hela-S3	cervix
9	chr7:117315800-117317200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr7:117316000-117317200	Enhancers	Dnd41	blood
11	chr7:117316400-117322200	Weak transcription	A549	lung
12	chr7:117316400-117323000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:117316600-117317000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:117316600-117317000	Weak transcription	Rectal Mucosa Donor 29	rectum

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