Variant report

Variant	rs6973257
Chromosome Location	chr7:117364998-117364999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117359274..117361366-chr7:117364889..117367642,2	K562	blood:
2	chr7:117358870..117360774-chr7:117364748..117367642,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10226907	1.00[ASN][1000 genomes]
rs10231905	1.00[ASN][1000 genomes]
rs10244694	1.00[ASN][1000 genomes]
rs10249419	0.86[ASN][1000 genomes]
rs10274022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10278481	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10953848	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11767185	0.90[CEU][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11768272	0.95[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	1.00[ASN][1000 genomes]
rs1429563	1.00[ASN][1000 genomes]
rs1468262	0.95[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.95[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17452984	1.00[ASN][1000 genomes]
rs17550204	1.00[ASN][1000 genomes]
rs17550567	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1800136	0.83[MEX][hapmap]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs2111204	1.00[JPT][hapmap]
rs214163	0.86[ASN][1000 genomes]
rs34374846	1.00[ASN][1000 genomes]
rs34541842	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34637736	0.86[ASN][1000 genomes]
rs34665848	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	1.00[ASN][1000 genomes]
rs35454880	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500028	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730795	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.87[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730798	0.95[CEU][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730799	0.95[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.82[CEU][hapmap];0.85[CHD][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466618	1.00[ASN][1000 genomes]
rs6466624	0.85[CHD][hapmap]
rs6967714	0.97[EUR][1000 genomes]
rs6977789	0.91[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs739797	0.93[TSI][hapmap];0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs766874	1.00[CHB][hapmap]
rs7779353	1.00[ASN][1000 genomes]
rs7796168	0.87[ASN][1000 genomes]
rs7796211	1.00[ASN][1000 genomes]
rs7804816	0.91[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117346600-117373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117347600-117366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:117350200-117373800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:117351800-117366600	Weak transcription	Aorta	Aorta
7	chr7:117352800-117368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:117353200-117384600	Weak transcription	Ovary	ovary
9	chr7:117353400-117367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:117354600-117373800	Weak transcription	Esophagus	oesophagus
11	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:117355800-117369400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:117356800-117376000	Weak transcription	NH-A	brain
16	chr7:117357200-117374800	Weak transcription	Pancreas	Pancrea
17	chr7:117357600-117375400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:117357800-117370800	Weak transcription	Fetal Intestine Large	intestine
19	chr7:117358200-117370000	Weak transcription	Fetal Kidney	kidney
20	chr7:117358400-117371400	Weak transcription	Fetal Intestine Small	intestine
21	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:117358600-117368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
24	chr7:117359800-117368000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:117360000-117368000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:117360200-117374000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:117360400-117368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:117360400-117369000	Weak transcription	Adipose Nuclei	Adipose
29	chr7:117360600-117374800	Weak transcription	Left Ventricle	heart
30	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:117362800-117368200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:117362800-117371000	Strong transcription	Fetal Lung	lung
33	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:117363600-117365400	Strong transcription	Fetal Brain Male	brain
35	chr7:117363800-117365400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:117363800-117366000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:117363800-117366600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:117363800-117366800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:117363800-117368400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:117364000-117367000	Strong transcription	Brain Germinal Matrix	brain
41	chr7:117364000-117367000	Strong transcription	Brain Hippocampus Middle	brain
42	chr7:117364000-117368000	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr7:117364000-117368200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:117364000-117375400	Strong transcription	Fetal Brain Female	brain
45	chr7:117364200-117365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:117364200-117376600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:117364400-117367000	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr7:117364400-117368200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr7:117364600-117365200	Strong transcription	Brain Anterior Caudate	brain
50	chr7:117364600-117365400	Strong transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links